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#!/bin/bash | |
for SIMD in mmx sse sse2 sse3 ssse3 sse4.1 sse4.2 avx fma avx2 avx512bw avx512f avx512vl; do | |
echo ${SIMD} | |
gcc -DSIMDE_NO_NATIVE -DSIMDE_ENABLE_NATIVE_ALIASES -I. -fdump-tree-original ./test/build/CMakeFiles/munit.dir/munit/munit.c.o test/x86/${SIMD}.c -lm -o ${SIMD}.o || true # 2> /dev/null || true | |
grep Function ${SIMD}.c.004t.original | awk '{ print $3}' >> simde.functions | |
while read -r line ; do | |
if [[ "${line}" == "simde"* ]] ; then | |
if grep -q " ${line##simde}" simde/x86/${SIMD}.h ; then | |
echo ${line##simde} |
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[2/475] /usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.1+ds/test/include -I/build/seqan3-3.0.1+ds/include -isystem /build/seqan3-3.0.1+ds/submodules/sdsl-lite/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -std=c++2a -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -fconcepts -pthread -MD -MT alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o -MF alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o.d -o alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o -c /build/seqan3-3.0.1+ds/test/unit/alignment/aligned_sequence_test.cpp | |
FAILED: alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o | |
/usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0 |
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g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/build/last-align-1047=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -mavx2 -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc | |
In file included from ../debian/include/simde/x86/sse2.h:34, | |
from ../debian/include/simde/x86/sse3.h:28, | |
from ../debian/include/simde/x86/ssse3.h:28, | |
from ../debian/include/simde/x86/sse4.1.h:28, | |
from ../debian/include/simde/x86/avx2.h:26, | |
from mcf_simd.hh:7, | |
from GappedXdropAligner.hh:50, | |
from GappedXdropAlignerDna.cc:4: | |
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)': |
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/usr/bin/cmake -S/home/michael/src/simde/test -B/home/michael/src/simde/test/build --check-build-system CMakeFiles/Makefile.cmake 0 | |
/usr/bin/cmake -E cmake_progress_start /home/michael/src/simde/test/build/CMakeFiles /home/michael/src/simde/test/build/CMakeFiles/progress.marks | |
make -f CMakeFiles/Makefile2 all | |
make[1]: Entering directory '/home/michael/src/simde/test/build' | |
make -f CMakeFiles/simde-test-native.dir/build.make CMakeFiles/simde-test-native.dir/depend | |
make[2]: Entering directory '/home/michael/src/simde/test/build' | |
cd /home/michael/src/simde/test/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/michael/src/simde/test /home/michael/src/simde/test /home/michael/src/simde/test/build /home/michael/src/simde/test/build /home/michael/src/simde/test/build/CMakeFiles/simde-test-native.dir/DependInfo.cmake --color= | |
make[2]: Leaving directory '/home/michael/src/simde/test/build' | |
make -f CMakeFiles/simde-test-native.dir/build.make CMakeFiles/simde-test-native.dir/build | |
make[2]: Entering direct |
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[73/502] /usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.0.0.git.20200110.b42671eac39/test/include -I/build/seqan3-3.0.0.0.git.20200110.b42671eac39/include -isystem /build/seqan3-3.0.0.0.git.20200110.b42671eac39/submodules/sdsl-lite/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.0.0.git.20200110.b42671eac39=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -std=c++2a -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -fconcepts -pthread -MD -MT alignment/pairwise/CMakeFiles/semi_global_affine_unbanded_test.dir/semi_global_affine_unbanded_test.cpp.o -MF alignment/pairwise/CMakeFiles/semi_global_affine_unbanded_test.dir/semi_global_affine_unbanded_test.cpp.o.d -o alignment/pairwise/CMakeFiles/semi_global_affine_unbanded_test.dir/semi_global_affine_unbanded_test.cpp.o -c /build/seqan3-3.0.0.0.git.20200110.b42671eac39/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp |
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[0mI: Running in no-targz mode[0m | |
[0mI: pbuilder: network access will be disabled during build[0m | |
[0mI: Current time: Fri Dec 20 09:24:04 PST 2019[0m | |
[0mI: pbuilder-time-stamp: 1576862644[0m | |
[0mI: copying local configuration[0m | |
[1;33mW: No local /etc/mailname to copy, relying on /var/cache/pbuilder/build/cow.26693/etc/mailname to be correct[0m | |
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage for details.[0m | |
[0mI: mounting /proc filesystem[0m | |
[0mI: mounting /sys filesystem[0m | |
[0mI: creating /{dev,run}/shm[0m |
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[0mI: Running in no-targz mode[0m | |
[0mI: pbuilder: network access will be disabled during build[0m | |
[0mI: Current time: Fri Dec 6 19:44:44 CET 2019[0m | |
[0mI: pbuilder-time-stamp: 1575657884[0m | |
[0mI: copying local configuration[0m | |
[1;33mW: No local /etc/mailname to copy, relying on /var/cache/pbuilder/build/cow.30182/etc/mailname to be correct[0m | |
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage for details.[0m | |
[0mI: mounting /proc filesystem[0m | |
[0mI: mounting /sys filesystem[0m | |
[0mI: creating /{dev,run}/shm[0m |
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FAILED: search/CMakeFiles/search_test.dir/search_test.cpp.o | |
/usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.0+ds2/test/include -I/build/seqan3-3.0.0+ds2/include -isystem /build/seqan3-3.0.0+ds2/submodules/sdsl-lite/include -isystem /build/seqan3-3.0.0+ds2/submodules/range-v3/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.0+ds2=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -std=c++17 -fconcepts -MD -MT search/CMakeFiles/search_test.dir/search_test.cpp.o -MF search/CMakeFiles/search_test.dir/search_test.cpp.o.d -o search/CMakeFiles/search_test.dir/search_test.cpp.o -c /build/seqan3-3.0.0+ds2/test/unit/search/search_test.cpp | |
In file included from /build/seqan3-3.0.0+ds2/include/seqan3/search/fm_index/fm_index.hpp:24, | |
from /build/seqan3-3.0.0+ds2/include/seqan3/search/fm_index/bi_fm_index.hpp:20, | |
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#!/usr/bin/env cwl-runner | |
class: Workflow | |
id: file:///home/michael/common-workflow-language/v1.0/v1.0.orig/count-lines3-wf.cwl | |
inputs: | |
- id: file1 | |
type: | |
items: File | |
type: array | |
outputs: | |
- id: count_output |
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