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mr-c / native-funsc.sh
Created April 20, 2020 11:11
#!/bin/bash
for SIMD in mmx sse sse2 sse3 ssse3 sse4.1 sse4.2 avx fma avx2 avx512bw avx512f avx512vl; do
echo ${SIMD}
gcc -DSIMDE_NO_NATIVE -DSIMDE_ENABLE_NATIVE_ALIASES -I. -fdump-tree-original ./test/build/CMakeFiles/munit.dir/munit/munit.c.o test/x86/${SIMD}.c -lm -o ${SIMD}.o || true # 2> /dev/null || true
grep Function ${SIMD}.c.004t.original | awk '{ print $3}' >> simde.functions
while read -r line ; do
if [[ "${line}" == "simde"* ]] ; then
if grep -q " ${line##simde}" simde/x86/${SIMD}.h ; then
echo ${line##simde}
@mr-c
mr-c / seqan3-3.0.1_i386.build
Created January 27, 2020 12:51
[2/475] /usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.1+ds/test/include -I/build/seqan3-3.0.1+ds/include -isystem /build/seqan3-3.0.1+ds/submodules/sdsl-lite/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -std=c++2a -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -fconcepts -pthread -MD -MT alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o -MF alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o.d -o alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o -c /build/seqan3-3.0.1+ds/test/unit/alignment/aligned_sequence_test.cpp
FAILED: alignment/CMakeFiles/aligned_sequence_test.dir/aligned_sequence_test.cpp.o
/usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0
@mr-c
mr-c / last-align_1047-1_amd64.build
Created January 24, 2020 15:10
g++ -DLAST_INT_TYPE=unsigned -DALPHABET_CAPACITY=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAS_CXX_THREADS -DSIMDE_ENABLE_OPENMP -g -O2 -fdebug-prefix-map=/build/last-align-1047=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -std=c++11 -fopenmp-simd -O3 -mavx2 -I. -c -o mcf_gap_costs.o mcf_gap_costs.cc
In file included from ../debian/include/simde/x86/sse2.h:34,
from ../debian/include/simde/x86/sse3.h:28,
from ../debian/include/simde/x86/ssse3.h:28,
from ../debian/include/simde/x86/sse4.1.h:28,
from ../debian/include/simde/x86/avx2.h:26,
from mcf_simd.hh:7,
from GappedXdropAligner.hh:50,
from GappedXdropAlignerDna.cc:4:
../debian/include/simde/x86/sse.h: In function 'simde__m64 simde_mm_cvtps_pi16(simde__m128)':
@mr-c
mr-c / simde_0.0.0.git.20200120
Created January 20, 2020 15:23
/usr/bin/cmake -S/home/michael/src/simde/test -B/home/michael/src/simde/test/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /home/michael/src/simde/test/build/CMakeFiles /home/michael/src/simde/test/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/home/michael/src/simde/test/build'
make -f CMakeFiles/simde-test-native.dir/build.make CMakeFiles/simde-test-native.dir/depend
make[2]: Entering directory '/home/michael/src/simde/test/build'
cd /home/michael/src/simde/test/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/michael/src/simde/test /home/michael/src/simde/test /home/michael/src/simde/test/build /home/michael/src/simde/test/build /home/michael/src/simde/test/build/CMakeFiles/simde-test-native.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/michael/src/simde/test/build'
make -f CMakeFiles/simde-test-native.dir/build.make CMakeFiles/simde-test-native.dir/build
make[2]: Entering direct
@mr-c
mr-c / seqan3-3.0.0.0.git.20200110.b42671eac3-with-rangev3_0.10.0-1.txt
Created January 11, 2020 12:06
[73/502] /usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.0.0.git.20200110.b42671eac39/test/include -I/build/seqan3-3.0.0.0.git.20200110.b42671eac39/include -isystem /build/seqan3-3.0.0.0.git.20200110.b42671eac39/submodules/sdsl-lite/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.0.0.git.20200110.b42671eac39=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -std=c++2a -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -fconcepts -pthread -MD -MT alignment/pairwise/CMakeFiles/semi_global_affine_unbanded_test.dir/semi_global_affine_unbanded_test.cpp.o -MF alignment/pairwise/CMakeFiles/semi_global_affine_unbanded_test.dir/semi_global_affine_unbanded_test.cpp.o.d -o alignment/pairwise/CMakeFiles/semi_global_affine_unbanded_test.dir/semi_global_affine_unbanded_test.cpp.o -c /build/seqan3-3.0.0.0.git.20200110.b42671eac39/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp
@mr-c
mr-c / 2019_12_20_last-align_1021-3_amd64.build
Last active December 20, 2019 17:27
This file has been truncated, but you can view the full file.
I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Fri Dec 20 09:24:04 PST 2019
I: pbuilder-time-stamp: 1576862644
I: copying local configuration
W: No local /etc/mailname to copy, relying on /var/cache/pbuilder/build/cow.26693/etc/mailname to be correct
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
@mr-c
mr-c / simde_0.0.0.git.20191205.c2e740c-1_amd64.build
Last active December 6, 2019 18:49
trim post-failure vim install
I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Fri Dec 6 19:44:44 CET 2019
I: pbuilder-time-stamp: 1575657884
I: copying local configuration
W: No local /etc/mailname to copy, relying on /var/cache/pbuilder/build/cow.30182/etc/mailname to be correct
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
@mr-c
mr-c / seqan3.0.0_arm64_error.txt
Created November 28, 2019 19:08
FAILED: search/CMakeFiles/search_test.dir/search_test.cpp.o
/usr/bin/ccache /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.0+ds2/test/include -I/build/seqan3-3.0.0+ds2/include -isystem /build/seqan3-3.0.0+ds2/submodules/sdsl-lite/include -isystem /build/seqan3-3.0.0+ds2/submodules/range-v3/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.0+ds2=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -std=c++17 -fconcepts -MD -MT search/CMakeFiles/search_test.dir/search_test.cpp.o -MF search/CMakeFiles/search_test.dir/search_test.cpp.o.d -o search/CMakeFiles/search_test.dir/search_test.cpp.o -c /build/seqan3-3.0.0+ds2/test/unit/search/search_test.cpp
In file included from /build/seqan3-3.0.0+ds2/include/seqan3/search/fm_index/fm_index.hpp:24,
from /build/seqan3-3.0.0+ds2/include/seqan3/search/fm_index/bi_fm_index.hpp:20,
@mr-c
mr-c / count-lines3-wf.cwl
Created November 19, 2019 17:14
#!/usr/bin/env cwl-runner
class: Workflow
id: file:///home/michael/common-workflow-language/v1.0/v1.0.orig/count-lines3-wf.cwl
inputs:
- id: file1
type:
items: File
type: array
outputs:
- id: count_output
@mr-c
mr-c / __native.i.gz
Last active October 30, 2019 10:03
mypyc_0.740_powerpc
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