mwalzer

library(ggplot2)
library(dplyr)
library(tidyr)

msstats<- peptides.lfq.tutorial

# Assume cf_charge as PrecursorCharge for all features in one row of TextExporter output
msstats <- msstats %>% rename(PrecursorCharge=charge_cf)

# Drop useless cols

mwalzer

apiVersion: v1
kind: Pod
metadata:
  name: init-test-pod-only
spec:
  containers:
  - name: svn-pod
    image: mwalzer/alpine-svn
    imagePullPolicy: IfNotPresent
    # container will "crash" if no command is present as there is no default entrypoint as e.g. would be in nginx

mwalzer

library(ggplot2) 
# ggpie: draws a pie chart.
# give it:
# * `dat`: your dataframe
# * `by` {character}: the name of the fill column (factor)
# * `totals` {character}: the name of the column that tracks
#    the time spent per level of `by` (percentages work too).
# returns: a plot object.

#credit http://mathematicalcoffee.blogspot.co.uk/2014/06/ggpie-pie-graphs-in-ggplot2.html

mwalzer

FROM microsoft/dotnet-framework:3.5
#FROM microsoft/windowsservercore:10.0.14393.206
#WTF? seems .net 35 is not activated

SHELL ["powershell"]

COPY pwiz c:/pwiz/
COPY 06282014_JLB_UF_Run3.raw c:/temp/06282014_JLB_UF_Run3.raw

# Note: Add .NET + ASP.NET

mwalzer

#hypervisor requirements ...
# --vm-driver=none if docker is installed might be enough

#kubectl
curl -LO https://storage.googleapis.com/kubernetes-release/release/$(curl -s https://storage.googleapis.com/kubernetes-release/release/stable.txt)/bin/linux/amd64/kubectl && chmod +x kubectl && sudo mv kubectl ~/cloud-stuff/utils/

#minikube
curl -Lo minikube https://github.com/kubernetes/minikube/releases/download/$(curl -s "https://api.github.com/repos/kubernetes/minikube/releases/latest" | grep -Po '"tag_name": "\K.*?(?=")')/minikube-linux-amd64 && chmod +x minikube-linux-amd64 && sudo mv minikube-linux-amd64 ~/cloud-stuff/utils/minikube

#launch

mwalzer

#1 
"content": {
	"_cvRef": "PSI-QC-CV",
	"_accession": "QC:301_filespanning",
	"_value": "{'filenames':[rawfile001,rawfile002,rawfile003,rawfile004,rawfile005],'MS:1000043':[123,456,789,666,901]}"
},

#2
"content": {
	"_cvRef": "PSI-QC-CV",

mwalzer

/**
 * Will add events per row from a spreadsheet in a calendar.
 *
 * Events are expected to start being described from row 'startRow' on, 
 *  having the time in the first column in HH:MM format (full 24h!), the name of the event in 
 *  second column (empty entries will make the row being ignored), and third and fourth column 
 *  values added each as a line in the event description.
 */
function createCalendarEvent() {
  var sheet = SpreadsheetApp.getActiveSheet();

mwalzer

import os 
from hurry.filesize import size, si
filename = "test.txt"
limit = 1000000
var = "filenames.wiff"
with open(filename, 'w') as out:
	for f in range(0,limit):
		out.write(var + '\n')

s = os.path.getsize("/tmp/{x}".format(x=filename))

mwalzer

#!/bin/bash
IPT="/sbin/iptables"

# Server IP
SERVER_IP="$(ip addr show eth0 | grep 'inet ' | cut -f2 | awk '{ print $2}')"

# Your DNS servers you use: cat /etc/resolv.conf
DNS_SERVER="8.8.4.4 8.8.8.8"

# Allow connections to this package servers

mwalzer

{ "mzQC": {
  "creationDate": "2019-08-15T11:35:23",
  "version": "0_0_11",
  "runQualities": [
    {
      "metadata": {
        "inputFiles": [
          {
            "location": "file:///dev/null",
            "name": "CPTAC_CompRef_00_iTRAQ_01_2Feb12_Cougar_11-10-09.raw",