Nick Markov mxposed
mxposed
/ velocyto.sh
Created
May 4, 2019 17:16
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| $ cat velocyto-sc14.sh | |
| #!/bin/bash | |
| #MSUB -A b1042 | |
| #MSUB -q genomics | |
| #MSUB -l walltime=10:00:00 | |
| #MSUB -N velocyto-sc14 | |
| #MSUB -l nodes=1:ppn=4 | |
| #MSUB -o velocyto-sc14.out.log | |
| #MSUB -e velocyto-sc14.err.log |
mxposed
/ jedi-debug
Created
April 18, 2020 22:57
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| speed: init 3.8186559677124023 | |
| speed: parsed 3.821230888366699 | |
| /anaconda3/bin/ipython:6: DeprecationWarning: Deprecated since version 0.16.0. Use Script(...).complete instead. | |
| dbg: Start: complete | |
| dbg: infer_node <Name: plt@1,0>@(1, 0) in MixedModuleContext(<ModuleValue: __main__@1-1 is_stub=False>) | |
| dbg: context.goto <Name: plt@1,0> in (MixedModuleContext(<ModuleValue: __main__@1-1 is_stub=False>)): [MixedName(<CompiledName: (<CompiledValueName: string_name=NamespaceObject>).plt>)] | |
| dbg: context.names_to_types: [MixedName(<CompiledName: (<CompiledValueName: string_name=NamespaceObject>).plt>)] -> S{<MixedObject: <module 'matplotlib.pyplot' from '/anaconda3/lib/p..; <ModuleValue: matplotlib.pyplot@4-3270 is_stub=False>>} | |
| dbg: infer_trailer: PythonNode(trailer, [<Operator: .>, <Name: figure@1,4>]) in S{<MixedObject: <module 'matplotlib.pyplot' from '/anaconda3/lib/p..; <ModuleValue: matplotlib.pyplot@4-3270 is_stub=False>>} | |
| dbg: context.goto <Name: figure@1,4> in (<MixedObject: <module 'matplotlib.pyplo |
mxposed
/ index.html
Created
June 16, 2020 19:16
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| <!doctype html> | |
| <html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <title></title> | |
| <link rel="stylesheet" href="style.css"> | |
| <script src="https://code.jquery.com/jquery-3.5.1.min.js"></script> | |
| <script src="main.js"></script> | |
| </head> | |
| <body> |
mxposed
/ small_umap_coords.py
Created
May 16, 2022 20:17
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| fig, ax = plt.subplots(figsize=(8, 8)) | |
| sc.pl.umap(ds, color="cell_type", legend_loc="on data", size=10, ax=ax, show=False) | |
| shrink_by = 0.1 | |
| xlim = ax.get_xlim() | |
| ylim = ax.get_ylim() | |
| xbound = xlim[0] + (xlim[1] - xlim[0]) * shrink_by | |
| ybound = ylim[0] + (ylim[1] - ylim[0]) * shrink_by | |
| b = ax.spines["bottom"] |
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