ngcrawford

#!/usr/bin/env python
# encoding: utf-8

import sys
import argparse

def interface():
    parser = argparse.ArgumentParser()

    parser.add_argument('--rm-short-reads',

ngcrawford

def topology_test(tree, query_tree, symmetric_distance=False):
	"""Given a tree and a query tree this function tests if the query tree is present or identical to the 
	tree. If 'symmetric_distance' is set to True the symmetric distance of the query tree to the relavent taxa in the 
        tree is returned.

	Both trees should be tree objects and contain idential taxon labels.

	Examples:
	--------