I hereby claim:
- I am nikaspran on github.
- I am nikaspran (https://keybase.io/nikaspran) on keybase.
- I have a public key whose fingerprint is D50C CC9B 729B B563 1FBB EC86 6112 C64F D377 F37D
To claim this, I am signing this object:
-- ecris schema queue @ CRDB | |
CREATE USER ecris IDENTIFIED BY ecris | |
DEFAULT TABLESPACE tab | |
TEMPORARY TABLESPACE temp; | |
GRANT CONNECT, RESOURCE, aq_administrator_role TO ecris; | |
begin |
def filter_by_min_positives(blast_results, minPositivesPercent): | |
correct_indices = [] | |
for index, sequence in enumerate(blast_results.alignments): | |
if sequence.hsps[0].positives * 100.0 / sequence.length >= minPositivesPercent: | |
correct_indices.append(index) | |
filtered_results = Bio.Blast.Record.Blast() | |
filtered_results.multiple_alignment = blast_results.multiple_alignment | |
for index in correct_indices: |
import Bio.Blast.NCBIWWW | |
import Bio.Blast.NCBIXML | |
import Bio.Blast.Record | |
import Bio.Align.Applications | |
import Bio.SeqIO | |
from StringIO import StringIO | |
from Bio.SeqRecord import SeqRecord | |
from Bio.Seq import Seq | |
from Bio.Alphabet import generic_protein | |
from Bio.Align.Applications import MafftCommandline |
/*jshint expr:true */ | |
'use strict'; | |
var Entity = require('./../model/Entity')(schema); | |
require('./EntityController')(server, schema); | |
describe('EntityController', function () { | |
it('should GET single', function (done) { | |
var entity = new Entity(); | |
entity.name = 'Test'; |
server.get('/api/relations', function (req, res, next) { | |
var predicates = []; | |
if (req.query.type) { | |
predicates.push(Predicates.eq('type', req.query.type)); | |
} | |
if (req.query.sourceId) { | |
predicates.push(Predicates.eq('sourceId', req.query.sourceId)); | |
} |
server.get('/api/entities', function (req, res, next) { | |
var criteria = new Predicates.Criteria(server.db); | |
criteria.select('Entity').from('Entity'); | |
if (req.query.type) { | |
criteria.add(Predicates.eq('Entity.type', req.query.type)); | |
} | |
if (req.query.name) { //TODO: escape regex | |
criteria.add(Predicates.match('Entity.name', '^' + req.query.name)); |
'use strict'; | |
function bootstrap(element, modules) { | |
element = $(element); | |
modules = modules || []; | |
// modules.unshift(['$provide', function ($provide) { | |
// $provide.value('$rootElement', element); | |
// }]); | |
modules.unshift('ng'); | |
var injector = element.injector(); |
initDb | |
.then(function () { | |
return project.save(); | |
}) | |
.then(function () { | |
return Environment.destroy(); | |
}) | |
.then(function () { | |
done(); | |
}); |
I hereby claim:
To claim this, I am signing this object: