##TSS(TTS) POSITION CLASSIFIED
HITS : distance < 10
SHIFT : 10<= distance < 50
ALT_E : 50 < distance and peak in Exon
ALT_E : 50 < distance and peak in Intron
COL14 for gene: number of tss, repr string, number of tts
##TSS(TTS) POSITION CLASSIFIED
HITS : distance < 10
SHIFT : 10<= distance < 50
ALT_E : 50 < distance and peak in Exon
ALT_E : 50 < distance and peak in Intron
COL14 for gene: number of tss, repr string, number of tts
this is a demo of circos.js. the lib is hosted in this website
This Library is obsoleted. please visit new library bam2x.circos.js
This is a javascript library for plot circos graph. Powered by Underscore, Backbone and D3JS.
#chr start end name strand | |
chr1 30073 30905 CUT001 + | |
chr1 138607 138831 CUT002 + | |
chr1 143439 143599 CUT003 + | |
chr1 170495 172447 CUT004 + | |
chr1 180255 180511 CUT005 + | |
chr2 96354 96570 CUT006 + | |
chr2 191991 192343 CUT007 + | |
chr2 237744 237928 CUT008 + | |
chr2 254872 255056 CUT009 + |
auto complete bam2x subcommand in command line. | |
put this in ~/.bash_completion.d |
{ "ideograms":[ | |
{"id":"RNA1","length":47,"color":"blue"}, | |
{"id":"RNA4","length":43,"color":"green"}, | |
{"id":"RNA2","length":50,"color":"red"}, | |
{"id":"RNA5","length":56,"color":"yellow"}, | |
{"id":"RNAU","length":21,"color":"orange"}, | |
{"id":"RNAX","length":45,"color":"purple"} | |
], | |
"plottracks": |
<html lang="en"> | |
<head> | |
<meta charset="utf-8"> | |
<title>zdata studio products </title> | |
<link rel="stylesheet" href="nav.css"> | |
<style> | |
body { | |
font:10px sans-serif; | |
} | |
</style> |
<html lang="en"> | |
<head> | |
<meta charset="utf-8"> | |
<title>random circos show</title> | |
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script> | |
<script src="http://d3js.org/d3.v3.min.js" charset="utf-8"></script> | |
<script src="https://dl.dropboxusercontent.com/u/26972351/viz/gist/bam2x.js/lib/bam2x.circos.js"></script> | |
</head> | |
<body> |
<html lang="en"> | |
<head> | |
<meta charset="utf-8"> | |
<title>z data studio show</title> | |
<link rel="stylesheet" href="nav.css"> | |
<style> | |
body { | |
font:10px sans-serif; | |
} | |
</style> |
venn pie graph demo