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@noamsgl
noamsgl / create_dataframe.py
Last active June 22, 2022 15:45
Preprocessing steps for Blood Cells Detection Dataset
import os, sys, random
import xml.etree.ElementTree as ET
from glob import glob
import pandas as pd
from shutil import copyfile
annotations = glob('BCCD_Dataset/BCCD/Annotations/*.xml')
df = []
for file in annotations:
#filename = file.split('/')[-1].split('.')[0] + '.jpg'
@noamsgl
noamsgl / crop_and_wrangle.py
Last active July 31, 2022 14:51
A script to crop and wrangle labels
import os
import pandas as pd
from PIL import Image
def crop_cell(row):
"""
crop_cell(row)
given a pd.Series row of the dataframe, load row['filename'] with PIL,
#%% IMPORTS
import torch
import pytorch_lightning as pl
import matplotlib.pyplot as plt
from pytorch_lightning import Trainer
from torch.nn import functional as F
import pyro
import pyro.distributions as dist
# %%
@noamsgl
noamsgl / cuda_11.8_installation_on_Ubuntu_22.04
Last active August 30, 2023 12:32 — forked from MihailCosmin/cuda_11.8_installation_on_Ubuntu_22.04
Instructions for CUDA v11.8 and cuDNN 8.7 installation on Ubuntu 22.04 for PyTorch 2.0.0
#!/bin/bash
### steps ####
# verify the system has a cuda-capable gpu
# download and install the nvidia cuda toolkit and cudnn
# setup environmental variables
# verify the installation
###
### to verify your gpu is cuda enable check