Using Python library Feedparser to fetch and parse RSS feeds

DemoFeedParser.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{'title': 'Models of The Month', 'title_detail': {'type': 'text/plain', 'language': None, 'base': 'https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss', 'value': 'Models of The Month'}, 'links': [{'rel': 'alternate', 'type': 'text/html', 'href': 'https://www.ebi.ac.uk/biomodels/content/model-of-the-month?all=yes'}], 'link': 'https://www.ebi.ac.uk/biomodels/content/model-of-the-month?all=yes', 'subtitle': 'Every month, a scientist from the BioModels Database team selects a model to further investigate and writes a synopsis to explain that model in details.', 'subtitle_detail': {'type': 'text/html', 'language': None, 'base': 'https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss', 'value': 'Every month, a scientist from the BioModels Database team selects a model to further investigate and writes a synopsis to explain that model in details.'}, 'language': 'en-GB', 'rights': 'Copyright 2005-2018, EMBL-EBI', 'rights_detail': {'type': 'text/plain', 'language': None, 'base': 'https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss', 'value': 'Copyright 2005-2018, EMBL-EBI'}, 'authors': [{'name': 'BioModels Team', 'email': 'biomodels-developers@lists.sf.net'}], 'author': 'biomodels-developers@lists.sf.net (BioModels Team)', 'author_detail': {'name': 'BioModels Team', 'email': 'biomodels-developers@lists.sf.net'}, 'image': {'title': 'Models of The Month', 'title_detail': {'type': 'text/plain', 'language': None, 'base': 'https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss', 'value': 'Models of The Month'}, 'href': 'https://www.ebi.ac.uk/biomodels/images/biomodels/logo_small.png'}}\n"
     ]
    }
   ],
   "source": [
    "import feedparser\n",
    "bm_mom_feeds_link = \"https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss\"\n",
    "d = feedparser.parse(bm_mom_feeds_link)\n",
    "print(d['feed'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Models of The Month\n"
     ]
    }
   ],
   "source": [
    "print(d['feed']['title']) # retrieve the title of the feeds"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?all=yes\n"
     ]
    }
   ],
   "source": [
    "print(d['feed']['link']) # retrieve the link of the feeds"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{'title': 'Chen2004 - An integrated yeast cell cycle model', 'title_detail': {'type': 'text/plain', 'language': None, 'base': 'https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss', 'value': 'Chen2004 - An integrated yeast cell cycle model'}, 'links': [{'rel': 'alternate', 'type': 'text/html', 'href': 'https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=12'}], 'link': 'https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=12', 'summary': 'Chen2004 integrated the various known components of yeast cell cycle conrtol and dynamics and succeeded in forming a model that could predict the phenotypes of over hundred deletion strains.', 'summary_detail': {'type': 'text/html', 'language': None, 'base': 'https://www.ebi.ac.uk/biomodels/modelOfTheMonth/rss', 'value': 'Chen2004 integrated the various known components of yeast cell cycle conrtol and dynamics and succeeded in forming a model that could predict the phenotypes of over hundred deletion strains.'}, 'published': 'Wed, 05 Dec 2018 13:56:40 GMT', 'published_parsed': time.struct_time(tm_year=2018, tm_mon=12, tm_mday=5, tm_hour=13, tm_min=56, tm_sec=40, tm_wday=2, tm_yday=339, tm_isdst=0), 'id': 'year=2018&month=12', 'guidislink': False}\n"
     ]
    }
   ],
   "source": [
    "print(d.entries[0])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=11\n"
     ]
    }
   ],
   "source": [
    "print(d.entries[1]['link'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "133\n"
     ]
    }
   ],
   "source": [
    "print(len(d['entries']))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Chen2004 - An integrated yeast cell cycle model\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=12\n",
      "Proctor2016 - Circadian rhythm of PTH and the dynamics of signalling molecules on bone remodelling\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=11\n",
      "Liebal et al., (2012). Proteolysis of beta-galactosidase following SigmaB activation in Bacillus subtilis\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=10\n",
      "Heldt2018 - Proliferation-quiescence decision in response to DNA damage.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=08\n",
      "Gould2013 - Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=07\n",
      "Rateitschak et al (2012). Parameter Identifiability and Sensitivity Analysis Predict Targets for Enhancement of STAT1 Activity in Pancreatic Cancer and Stellate Cells\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=06\n",
      "Costa et al (2014). An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2,3-butanediol production\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=05\n",
      "Jaiswal et al (2017). ATM/Wip1 activities at chromatin control Plk1 re-activation to determine G2 checkpoint duration.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=04\n",
      "Nguyen LK and Kholodenko BN (2016). Akt/mTOR and RTK/MAPK siganlling model may serve as a valuable tool for therapeutic research\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=03\n",
      "Sarma U and Ghosh I (2012). Design of kinase-phosphatase interactions and phosphatase sequestration shape MAPK cascade robustness and signal flow.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2018&month=02\n",
      "Leber et al (2016). Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=11\n",
      "Leber et al (2016). Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=11\n",
      "Lai et al., (2015). Modulation of calmodulin lobes by different targets: an allosteric model with hemiconcerted conformational transitions.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=10\n",
      "Padala et al., (2017). Cancerous perturbations within the ERK, PI3K/Akt, and Wnt/β-catenin signaling network constitutively activate inter-pathway positive feedback loops.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=09\n",
      "Padala et al., (2017). Cancerous perturbations within the ERK, PI3K/Akt, and Wnt/β-catenin signaling network constitutively activate inter-pathway positive feedback loops.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=09\n",
      "Mathias Uhlen et al., (2017). A pathology atlas of the human cancer transcriptome\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=08\n",
      "A pathology atlas of the human cancer transcriptome\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2017&month=08\n",
      "Dalle Pezze et al. (2016). A systems study reveals concurrent activation of AMPK and mTOR by amino acids.\n",
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      "Palmér et al. (2014). Effects of IL-1?-Blocking Therapies in Type 2 Diabetes Mellitus: A Quantitative Systems Pharmacology Modeling Approach to Explore Underlying Mechanisms.\n",
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      "Benson et al. (2013). Systems pharmacology of the nerve growth factor pathway: use of a systems biology model for the identification of key drug targets...\n",
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      "Nguyen et al. (2011). Switches, excitable responses and oscillations in the Ring1B/Bmi1 ubiquitination system.\n",
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      "Carbo et al. (2013). Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity.\n",
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      "Petelenz-Kurdzeil et al. (2013). Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress\n",
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      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2016&month=09\n",
      "Peterson and Riggs (2010). A physiologically based mathematical model of integrated calcium homeostasis and bone remodeling.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2016&month=07\n",
      "Nayak et al. (2015). Using a Systems Pharmacology Model of the Blood Coagulation Network to Predict the Effects of Various Therapies on Biomarkers.\n",
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      "Palsson et al. (2013). The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models.\n",
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      "Raia et al. (2010). Dynamic Mathematical Modeling of IL13-Induced Signaling in Hodgkin and Primary Mediastinal B-Cell Lymphoma Allows Prediction of Therapeutic Targets.\n",
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      "Leber et al. (2015). Systems Modeling of Interactions between Mucosal Immunity and the Gut Microbiome during Clostridium difficile Infection.\n",
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      "Ouzounoglou et al. (2014). Modeling of alpha-synuclein effects on neuronal homeostasis.\n",
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      "Begitt et al.(2014). STAT1-cooperative DNA binding distinguishes type 1 from type 2 interferon signaling.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2014&month=10\n",
      "Dwivedi et al. (2014). A multiscale model of interleukin-6-mediated immune regulation in Crohn's disease and its application in drug discovery and development.\n",
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      "Proctor et al. (2013). Investigating interventions in Alzheimer's disease with computer simulation models.\n",
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      "Ribba et al., (2012). A tumor growth inhibition model for low-grade glioma treated with chemotherapy or radiotherapy.\n",
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      "McAuley et al. (2012). A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation.\n",
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      "Kim et al. (2007). A hidden oncogenic positive feedback loop caused by crosstalk between Wnt and ERK pathways.\n",
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      "Izhikevich EM (2004), Which model to use for cortical spiking neurons?\n",
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      "Restif and Grenfell (2006), Integrating life history and cross-immunity into the evolutionary dynamics of pathogens.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=11\n",
      "Lebeda et. al. (2008), Onset dynamics of type A botulinum neurotoxin-induced paralysis.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=08\n",
      "Hoffmann et. al. (2002), The IkB-NF-kB Signaling Module: Temporal Control and Selective Gene Activation.\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=07\n",
      "Chickarmane and Peterson (2008), A computational model for understanding stem cell, trophectoderm and endoderm lineage determination\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=06\n",
      "Izhikevich EM (2003), Simple model of spiking neurons\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=05\n",
      "Zhu et al. (2007), A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=04\n",
      "Borisov et al. (2009), Systems-level interactions between insulin-EGF networks amplify mitogenic signaling\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=03\n",
      "Swat et al. (2004), Bifurcation analysis of the regulatory modules of the mammalian G1/S transition\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2010&month=02\n",
      "Tham et al. (2008), A Pharmacodynamic Model for the Time Course of Tumour Shrinkage by Gemcitabine + Carboplatin in Non-Small Cell Lung Cancer Patients\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=01\n",
      "Bray and Bourret (1995), Bacterial Chemotaxis\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=09\n",
      "Goldbeter et al. (1990), Meyer and Stryer (1991), Two Models of Calcium Spiking\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=08\n",
      "Lavrentovich and Hemkin (2008), Calcium Oscillations in Astrocytes\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=07\n",
      "Morrison and Allegra (1989), Folate Cycle\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=06\n",
      "Rohwer and Botha (2001), Sucrose accumulation in sugar cane\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=05\n",
      "Goldbeter and Pourquie (2008), Somite Segmentation Clock\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=04\n",
      "Stefan et al. (2008), Allosteric Model of Calmodulin\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=03\n",
      "Proctor and Gray (2008), The p53-Mdm2 System\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=02\n",
      "Fernandez et al. (2006), Integration of glutamate and dopamine signals\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2009&month=01\n",
      "Proctor et al. (2007), Ubiquitin-Proteasome System\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=12\n",
      "Bakker et al. (2001), Glycolysis in Trypanosoma\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=11\n",
      "Fung et al. (2005), Metabolator\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=10\n",
      "Vilar et al. (2006), TGF-β\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=09\n",
      "Yang et al. (2007), Arachidonic Acid\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=08\n",
      "Marhl et al. (2000), Calcium Oscillations\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=07\n",
      "Legewie et al. (2006), Apoptosis\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=06\n",
      "Maurya et al. (2005), GTPase-Cycle Module\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=05\n",
      "Goldbeter (1991), Minimal Mitotic Oscillator\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=04\n",
      "Novak and Tyson (1993), M-phase Control\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=03\n",
      "O'Dea et al. (2007), IΚB Metabolism\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=02\n",
      "Kofahl and Klipp (2004), Yeast Pheromone Pathway\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2008&month=01\n",
      "Tabak et al. (2007), Dopamine\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=12\n",
      "Komarova et al. (2005), Specificity in Cell Signaling\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=11\n",
      "Komarova et al. (2003), Bone Remodeling\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=10\n",
      "Fields and Noyes (1974), The Oregonator\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=09\n",
      "Goldbeter (2006), Human Weight Cycling\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=08\n",
      "Bhartiya et al. (2004), Tryptophan Operon\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=07\n",
      "Markevich et al. (2004), MAPK\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=06\n",
      "Hoefnagel et al. (2002), Metabolic Control Analysis\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=05\n",
      "Bindschadler and Sneyd (2001), Coupled Calcium Oscillators\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=04\n",
      "Edelstein (1996), Nicotinic Receptor\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=03\n",
      "Sasagawa (2005), MAPK\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=02\n",
      "Teusink (2000), Glycolysis\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2007&month=01\n",
      "Yildirim (2003), lac Operon\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=12\n",
      "Smolen (2002), Circadian Oscillator\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=11\n",
      "Tyson (1991), Modelling Cell Division\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=10\n",
      "Hodgkin and Huxley (1952), Membrane Current in the Giant Squid Axon\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=09\n",
      "Kholodenko (1999), Epidermal Growth Factor Receptor signalling\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=08\n",
      "Elowitz and Leibler (2000), The Repressilator\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=07\n",
      "Huang and Ferrell (1996), MAPK ultrasensitivity\n",
      "https://www.ebi.ac.uk/biomodels/content/model-of-the-month?year=2006&month=06\n"
     ]
    }
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    "    print(entry.title + \"\\n\" + entry.link)"
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