nuin

"""
PWMSearch

Searches through a fasta sequence for the relevant Position Weight Matrices 
from the Jaspar Database.

"""
from __future__ import division

from optparse import OptionParser

nuin

def parse_color(s):
    """ Parses color string in format #ABC or #AABBCC to RGB tuple. """
    g = len(s)
    assert(g in (4,5,7,9))

    if g in (4,5):
        return tuple(int(ch * 2, 16) for ch in s[1:])
    else:
        return tuple(int(ch1 + ch2, 16) for ch1, ch2 in \
                     zip(

nuin

grep "^>" t.txt | awk '{print $1}'

nuin

intext = ">pSB4T5 A 8326 Plasmid_Backbone Low copy BioBrick standard vector"

my_text = intext.split()[0][1:]

print my_text

nuin

#!/usr/bin/ruby
# save as pubmed.rb and test using 'ruby pubmed.rb 19662644'
# keyword search may return > 1 record due to retmax bug
# http://github.com/bioruby/bioruby/commit/51c3223e033b2992a7bd95da282f88164406ff92

require 'rubygems'
require 'bio'

keywords = ARGV.join(' ')

nuin

1: C
2: PHP
3: JavaScript
4: C++
5: Java
6: Ruby
7: Emacs Lisp
8: Python
9: Perl
10: C Sharp

nuin

#usage 
#first_file $1 - first parameter
#last_file $2 - second parameter

for ((i=$1;i<=$2;i++))
do 
    head -n500 $i.csv > $i.bak
done

nuin

for file in *.*;do
    tail -n+3000 $file > $file.truncated
done