nylander

>PIS68081.1 anaerobic sulfatase maturase [Vibrio parahaemolyticus 1911C]
MQITQSPQFNGKASKRLHVMAKPIGAACNIDCTYCYYLSKQDLLEYKKGCSPMMDEATLEAYIKQYIEGQ
NTPEIVFSWQGGEPTMLGLDYFKKIVEFQAKYQPEGVKISNDLQTNGTLLNDEWCEFLSENHFLVGLSID
GPEMLHNAYRTNRAGRGTFKQVMNAVELLHKHQVNFATLTCVNNLTSRNPLEVYRFLRDEVRSPQMQFIP
IVEQKTFRTTAPQKWQPQEQLKQGDKRLIPGHKDSVMEPWCVADEAWGNFLIAVFDEWIKNDIGKVFVQY
FEASVEAWMGRANPLCTLGEVCGKGLAMEPNGDVFACDHYVYPEYKIGNIHHDKLDELAYSKEQQKFGFA
KSRLLTQQCRDCEYQFACYGECPKNRFIRTRDGEPGLNYLCAGWKKFFAHADKAMAYILRATGNVVAHGK
YSDSVVRQESEQRPVFETKF
>PIS68069.1 anaerobic sulfatase maturase [Vibrio parahaemolyticus 1911C]
MKDAYVRRFHVMAKPGGAKCNIDCQYCFYLHKENLLHQEKQPKMDDATLEAFVKSYIESQDGEEIVFSWQ

nylander

#!/bin/bash

## Fetch scientific name for Genbank accession number
## Version: Mon 20 nov 2017 13:35:49
## By:      {Andreas.Kahari,Johan.Nylander}@nbis.se
## Usage:   ./acc2sci.sh infile-with-accessions
## Notes:   Reads from file or STDIN, prints to STDOUT.
##          No detailed error checking! If any of the Accessions
##          provided as queries are incorrect, the script will
##          exit with msg: "Failure of post to find data to load.."

nylander

#!/usr/bin/env perl

use strict;
use warnings;

=pod

=head1

         FILE: extract_masked.pl

nylander

#!/usr/bin/perl 
#===============================================================================
=pod

=head1
         FILE:  cgt.pl

        USAGE:  ./cgt.pl

  DESCRIPTION:  The intention of the original code was to search genbank