oeway

import sys, os
import imagej
import scyjava as sj
import argparse
import asyncio
import traceback
import numpy as np
import xarray as xr
from jpype import JOverride, JImplements
from imjoy_rpc.hypha import connect_to_server

oeway

<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "CodeInterpreter",
  "type": "window",
  "tags": [],
  "ui": "",

oeway

<docs>
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "ImageViewerServices",
  "type": "web-worker",
  "tags": [],
  "ui": "",

oeway

oeway

SAM for the BioEngine

Inference

Here are some files for converting SAM models to make it available in the BioEngine (local deployment: https://github.com/oeway/bioengine/).

The tree strcture for the model repository is like this:

├── sam-backbone
│ ├── 1

oeway

<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "React UI Plugin",
  "type": "window",
  "tags": [],
  "ui": "",

oeway

<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "stlite Demo",
  "type": "window",
  "tags": [],
  "ui": "",

oeway

import asyncio
import threading
from concurrent.futures import ThreadPoolExecutor
from imjoy_rpc.hypha import connect_to_server
import time


class BackgroundServer:
    def __init__(self, server_url):
        self.loop = None

oeway

# pip install imjoy-rpc numpy qrcode[pil]
# Code adopted from https://github.com/Khalil-Youssefi/qrcodeT/tree/master
# Released under MIT license

import qrcode
import numpy as np

def qrcode2text(img):
    bindata = np.array(img)[::10,::10] + 0
    if bindata.shape[0] % 2 != 0:

oeway

Hypha

Hypha is a server software for creating computational platforms consists of computational and user interface components.

Hypha server act as a hub for connecting different components through imjoy-rpc.

Installation

pip install hypha