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olgabot / spine_bounds.ipynb
Created January 30, 2014 23:13
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olgabot / 2014_02_10_choose_beta.ipynb
Last active August 29, 2015 13:56
Example code to choose one beta distribution
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olgabot / 2014-02-27_categorical_modalities_pymc.ipynb
Last active August 29, 2015 13:56
How to use PyMC to choose between one of 5 specific beta distributions?
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olgabot / botvinnik_bnfo285_hw3.ipynb
Created March 4, 2014 19:19
Olga Botvinnik's homework submission for UCSD BNFO 285
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olgabot / brew --config
Last active August 29, 2015 13:57
Mac OS X 10.9.2 fails on brew install --HEAD ghostscript
scrm-bio-228-232-2:replication olga$ brew --config
HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/homebrew.git
HEAD: 8873aa539c82a25a53c2574062d32f831b8ce9d8
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
CPU: 8-core 64-bit ivybridge
OS X: 10.9.2-x86_64
Xcode: 5.1
CLT: 5.1.0.0.1.1393561416
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olgabot / botvinnik_bnfo285_hw4.ipynb
Created March 18, 2014 16:46
BNFO 285 hw4 submission
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olgabot / seaborn_heatmap.ipynb
Created March 25, 2014 00:19
Seaborn heatmap examples
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olgabot / test.json
Last active August 29, 2015 13:57
testing pandas read_json
{"CVN_01":{"["10000@uc001iab.1@uc001hzz.1","ALE"]":0.98,"["10001@uc001xmg.1@uc001xmf.1","ALE"]":null,"["10002@uc002ath.1@uc002ati.1","ALE"]":null,"["10003@uc001pdd.2@uc001pde.2","ALE"]":null,"["10003@uc001pdd.2@uc001pdf.2uc009yvx.1uc009yvy.1","ALE"]":null},"CVN_02":{"["10000@uc001iab.1@uc001hzz.1","ALE"]":0.98,"["10001@uc001xmg.1@uc001xmf.1","ALE"]":null,"["10002@uc002ath.1@uc002ati.1","ALE"]":null,"["10003@uc001pdd.2@uc001pde.2","ALE"]":null,"["10003@uc001pdd.2@uc001pdf.2uc009yvx.1uc009yvy.1","ALE"]":null},"CVN_03":{"["10000@uc001iab.1@uc001hzz.1","ALE"]":null,"["10001@uc001xmg.1@uc001xmf.1","ALE"]":0.97,"["10002@uc002ath.1@uc002ati.1","ALE"]":null,"["10003@uc001pdd.2@uc001pde.2","ALE"]":null,"["10003@uc001pdd.2@uc001pdf.2uc009yvx.1uc009yvy.1","ALE"]":null},"CVN_04":{"["10000@uc001iab.1@uc001hzz.1","ALE"]":null,"["10001@uc001xmg.1@uc001xmf.1","ALE"]":null,"["10002@uc002ath.1@uc002ati.1","ALE"]":null,"["10003@uc001pdd.2@uc001pde.2","ALE"]":null,"["10003@uc001pdd.2@uc001pdf.2uc009yvx.1uc009yvy.1","ALE"]":null}
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olgabot / (home-yeo) ssh -4 -vvv tscc-login1 7710:localhost::7710
Last active August 29, 2015 13:58
Debugging ssh tunneling into TSCC
debug3: load_hostkeys: loading entries for host "tscc-login1" from file "/home/obotvinnik/.ssh/known_hosts"
debug3: load_hostkeys: loaded 0 keys
debug3: load_hostkeys: loading entries for host "tscc-login1" from file "/etc/ssh/ssh_known_hosts"
debug3: load_hostkeys: found key type DSA in file /etc/ssh/ssh_known_hosts:341
debug3: load_hostkeys: found key type RSA in file /etc/ssh/ssh_known_hosts:342
debug3: load_hostkeys: loaded 2 keys
debug3: load_hostkeys: loading entries for host "10.1.255.90" from file "/home/obotvinnik/.ssh/known_hosts"
debug3: load_hostkeys: loaded 0 keys
debug3: load_hostkeys: loading entries for host "10.1.255.90" from file "/etc/ssh/ssh_known_hosts"
debug3: load_hostkeys: found key type DSA in file /etc/ssh/ssh_known_hosts:341
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olgabot / README.md
Last active August 29, 2015 13:58
Segfault on scipy test_djbfft

How Numpy was installed:

git clone git@github.com:numpy/numpy
git clone git@github.com:scipy/scipy
cd numpy
cp ~/.numpy.site.cfg .

emacs numpy/distutils/intelccompiler.py 
# In "IntelEM64TCCompiler", changed:

self.cc_exe = 'icc -m64 -fPIC'