omsai

'''
Zip Andor iQ settings

Creates a zip file on the desktop containing:
- iQ settings folder
  C:\Documents and Settings\All Users\Application Data\Kinetic Imaging\
  C:\ProgramData\Kinetic Imaging\
- Configurations file
  C:\Program Files\Andor Bioimaging\Common Files\kiconfig.ini
  C:\Program Files (x86)\Andor Bioimaging\Common Files\kiconfig.ini

omsai

'''
Generate an Andor iQ .rgn file with a scalable and repositionable pattern of 
FRAPPA points
'''

# User variables
SENSOR_SIZE = [512, 512]
CENTER = [255,255]
SIDE_LENGTH = 360
POINT_SPACING = 20

omsai

/*
Calculate specimen width in pixels using a line profile

Requires:
- Single channel image stack
- Line profile drawn on image

Algorithm:
- Assumes a single signal level threashold
- Checks each line profile pixel intensity from the left for start

omsai

/*
Calculate specimen width in pixels using a line profile

Requires:
- Single channel image stack
- Line profile drawn on image

Output:
- Bitmap image stack of profile plots of original stack (not usable data!)
- Text file on desktop with numeric data with format:

omsai

#BACKGROUND
'''
Saves image stamps, sorted by time, in CSV file on desktop.

FIXME: For this to work, upstream needs to patch imagedisk/__init__.py to use
new 3.x Python style class foo(object): instead of class foo: syntax.
'''

import imagedisk
import iqtools

omsai

/**
 * Make montage stacks from MetaMorph 7 High Throughput Screening.
 * 
 * MetaMorph 7's Screen Acquisition (screenacq) does not natively
 * support time and Z acquisitions from it's UI or journal functions.
 * Therefore it's easier to assemble the experiment with FIJI
 * including stitch TIF files together with overlap.  It is
 * assumed the grid of all sites in a well are imaged, i.e. supports
 * Metamorph's "Well Selection" but not "Site Selection".
 * 

omsai

#SHELL

"""
Calculate Spinning Disk uniformity and compare with Andor's specification.

Usage:
Start the Python IDE from iQ from under Plugins.  Run this Plugin from
the iQ menu and select the "Progress" tab.
Run a protocol with just "Snap" and loop protocol enabled to collect images.
The bar will update to show how close the image drop-off.

omsai

/**
 * Split Stack macro
 *
 * Fixes MetaMorph dual camera image files, by splitting them into
 * their separate channel files.
 *
 * Usage: In ImageJ, use Plugins > Macros > Run...
 *
 * Description:
 * 

drinks

// ==ClosureCompiler==
// @output_file_name default.js
// @compilation_level SIMPLE_OPTIMIZATIONS
// ==/ClosureCompiler==

/*

**Notes**

In some cases, forms will still get submitted when you click the submit button.

sloria

The Best of the Best Practices (BOBP) Guide for Python

A "Best of the Best Practices" (BOBP) guide to developing in Python.

In General

Values

• "Build tools for others that you want to be built for you." - Kenneth Reitz
• "Simplicity is alway better than functionality." - Pieter Hintjens