Pariksheet Nanda omsai

## gist:1411673
import imagedisk
from datetime import datetime

id = imagedisk.iQImageDisk()

##print type(id[1091567616].getDateAndTimeObject())

date_min = datetime(2011, 3, 7)
date_max = datetime(2011, 3, 10)
no_flip_rotation = 0

## iQ filename fixer.py
import imagedisk
import logging

REPLACE_DOT_WITH_CHAR = '_' # Replace dot with underscore
LOG_FILENAME = 'iQ_filename_fixer.log'

id = imagedisk.iQImageDisk()
##logging.basicConfig(filename=LOG_FILENAME, level=logging.DEBUG)
logging.basicConfig(level=logging.DEBUG)

## zip_iQ_settings.py
'''
Zip Andor iQ settings

Creates a zip file on the desktop containing:
- iQ settings folder
  C:\Documents and Settings\All Users\Application Data\Kinetic Imaging\
  C:\ProgramData\Kinetic Imaging\
- Configurations file
  C:\Program Files\Andor Bioimaging\Common Files\kiconfig.ini
  C:\Program Files (x86)\Andor Bioimaging\Common Files\kiconfig.ini

## generate_test_ROI_for_micropoint.py
'''
Generate an Andor iQ .rgn file with a scalable and repositionable pattern of
FRAPPA points
'''

# User variables
SENSOR_SIZE = [512, 512]
CENTER = [255,255]
SIDE_LENGTH = 360
POINT_SPACING = 20

## lcd.py
# -*- coding: utf-8 -*-
'''
Serial LCD control

Control Sparkfun LCD-10097 with DEV-09716
'''

from serial import Serial
from time import sleep

## image.py
# Resizes images in current folder for vandanashourie.com
# Saves images into sub-folders:
#   ./tabs-square    <- 150x150 thumbnauls
#   ./full           <- 725x525 images

import os, sys
import Image
import math


## alc_shutter_toggle_until_open.py
"""
Toggle safety shutter until open on Andor Laser Combiner
"""

from ctypes import windll, c_ulong, byref
from time  import sleep, clock
import sys

class DeVaSys:
    """Microcontroller board in Combiner controlling laser safety interlocks

## LineMeasure.txt
/*
Calculate specimen width in pixels using a line profile

Requires:
- Single channel image stack
- Line profile drawn on image

Algorithm:
- Assumes a single signal level threashold
- Checks each line profile pixel intensity from the left for start

## gist:2029530
/*
Calculate specimen width in pixels using a line profile

Requires:
- Single channel image stack
- Line profile drawn on image

Output:
- Bitmap image stack of profile plots of original stack (not usable data!)
- Text file on desktop with numeric data with format:

## gist:2363047
/*
Arduino UNO reads rising edge trigger pulses on pin 2 and displays counter on
Sparkfun SerLCD LCD-10097

Photo of setup: http://ompldr.org/vZGNlbA/photo.JPG

Pariksheet <p.nanda@andor.com> Mar 2012
*/
	import imagedisk
	from datetime import datetime

	id = imagedisk.iQImageDisk()

	##print type(id[1091567616].getDateAndTimeObject())

	date_min = datetime(2011, 3, 7)
	date_max = datetime(2011, 3, 10)
	no_flip_rotation = 0
	import imagedisk
	import logging

	REPLACE_DOT_WITH_CHAR = '_' # Replace dot with underscore
	LOG_FILENAME = 'iQ_filename_fixer.log'

	id = imagedisk.iQImageDisk()
	##logging.basicConfig(filename=LOG_FILENAME, level=logging.DEBUG)
	logging.basicConfig(level=logging.DEBUG)
	'''
	Zip Andor iQ settings

	Creates a zip file on the desktop containing:
	- iQ settings folder
	C:\Documents and Settings\All Users\Application Data\Kinetic Imaging\
	C:\ProgramData\Kinetic Imaging\
	- Configurations file
	C:\Program Files\Andor Bioimaging\Common Files\kiconfig.ini
	C:\Program Files (x86)\Andor Bioimaging\Common Files\kiconfig.ini
	'''
	Generate an Andor iQ .rgn file with a scalable and repositionable pattern of
	FRAPPA points
	'''

	# User variables
	SENSOR_SIZE = [512, 512]
	CENTER = [255,255]
	SIDE_LENGTH = 360
	POINT_SPACING = 20
	# -- coding: utf-8 --
	'''
	Serial LCD control

	Control Sparkfun LCD-10097 with DEV-09716
	'''

	from serial import Serial
	from time import sleep
	# Resizes images in current folder for vandanashourie.com
	# Saves images into sub-folders:
	# ./tabs-square <- 150x150 thumbnauls
	# ./full <- 725x525 images

	import os, sys
	import Image
	import math
	"""
	Toggle safety shutter until open on Andor Laser Combiner
	"""

	from ctypes import windll, c_ulong, byref
	from time import sleep, clock
	import sys

	class DeVaSys:
	"""Microcontroller board in Combiner controlling laser safety interlocks
	/*
	Calculate specimen width in pixels using a line profile

	Requires:
	- Single channel image stack
	- Line profile drawn on image

	Algorithm:
	- Assumes a single signal level threashold
	- Checks each line profile pixel intensity from the left for start
	/*
	Arduino UNO reads rising edge trigger pulses on pin 2 and displays counter on
	Sparkfun SerLCD LCD-10097

	Photo of setup: http://ompldr.org/vZGNlbA/photo.JPG

	Pariksheet <p.nanda@andor.com> Mar 2012
	*/