pachadotdev

#! /bin/bash
# this goes in /etc/acpi/
# also run sudo chmod +x /etc/acpi/cancel-white-noise.sh
amixer -c0 sset 'Headphone Mic Boost' 10dB

pachadotdev

#library(devtools)
#install_github("andrie/version.compare")

library(data.table)
library(dplyr)
library(version.compare)

scale.factor = 1.0

r = switch(

pachadotdev

#library(devtools)
#install_github("andrie/version.compare")

library(data.table)
library(dplyr)
library(version.compare)

scale.factor = 1.0

r = switch(

pachadotdev

#export RSTUDIO_WHICH_R=/usr/bin/R
export RSTUDIO_WHICH_R=/opt/R/R-3.4.2-intel-mkl/bin/R
#export RSTUDIO_WHICH_R=/opt/R/R-3.4.2-openblas/bin/R
#export RSTUDIO_WHICH_R=/opt/R/R-3.4.2-defaults/bin/R
#export RSTUDIO_WHICH_R=/opt/microsoft/ropen/3.4.2/lib64/R/bin/R

pachadotdev

# 1: Add RStudio to apt sources

# key added after sudo apt-get update returned a warning following this guide: https://support.rstudio.com/hc/en-us/articles/218004217-Building-R-from-source
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys  51716619E084DAB9
printf '#CRAN mirror\ndeb https://cran.rstudio.com/bin/linux/ubuntu artful/\ndeb-src https://cran.rstudio.com/bin/linux/ubuntu artful/\n' | sudo tee -a /etc/apt/sources.list.d/cran-mirror.list

# 2: Enable development repositories

# you need to enable multiverse repo or packages as xvfb won't be found
printf 'deb http://us.archive.ubuntu.com/ubuntu artful main restricted universe multiverse

pachadotdev

# 1: Add RStudio to apt sources

# key added after sudo apt-get update returned a warning following this guide: https://support.rstudio.com/hc/en-us/articles/218004217-Building-R-from-source
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys  51716619E084DAB9
printf '#CRAN mirror\ndeb https://cran.rstudio.com/bin/linux/ubuntu artful/\ndeb-src https://cran.rstudio.com/bin/linux/ubuntu artful/\n' | sudo tee -a /etc/apt/sources.list.d/cran-mirror.list

# 2: Enable development repositories

# you need to enable multiverse repo or packages as xvfb won't be found
printf 'deb http://us.archive.ubuntu.com/ubuntu artful main restricted universe multiverse

pachadotdev

cd ~/GitHub/r-with-intel-mkl/
rm -rf R-3.4.2
tar xzvf R-3.4.2.tar.gz
cd R-3.4.2

./configure --prefix=/opt/R/R-3.4.2-defaults --enable-R-shlib
make && sudo make install
printf 'export RSTUDIO_WHICH_R=/opt/R/R-3.4.2-defaults/bin/R\n' | tee -a ~/.profile

pachadotdev

cd ~/GitHub/r-with-intel-mkl
wget https://mran.blob.core.windows.net/install/mro/3.4.2/microsoft-r-open-3.4.2.tar.gz
tar xzvf microsoft-r-open-3.4.2.tar.gz
cd microsoft-r-open
sudo ./install.sh
printf 'export RSTUDIO_WHICH_R=/opt/microsoft/ropen/3.4.2/lib64/R/bin/R\n' | tee -a ~/.profile

# it was not possible to start /opt/microsoft/ropen/3.4.2/lib64/R/bin/R
# the error is:
# *** caught segfault ***

pachadotdev

sudo apt-get remove r-base r-base-dev
sudo apt-get remove 'r-cran.*'

sudo apt-get autoclean && sudo apt-get autoremove

sudo apt-get build-dep r-base

sudo rm -rf /opt/R/R-3.4.2-openblas
sudo rm -rf /opt/R/R-3.4.2-defaults
sudo ln -s /opt/R/R-3.4.2-intel-mkl/bin/R  /usr/bin/R

pachadotdev

# remove installed user packages
rm -rf ~/R

# create new user packages directory
mkdir ~/R/
mkdir ~/R/x86_64-pc-linux-gnu-library/
mkdir ~/R/x86_64-pc-linux-gnu-library/3.4

# install common packages
R --vanilla << EOF