pastewka

sudo wget -qO /etc/yum.repos.d/enpass-yum.repo https://yum.enpass.io/enpass-yum.repo
sudo wget -qO /etc/yum.repos.d/softmaker.repo https://shop.softmaker.com/repo/softmaker.repo

sudo rpm -v --import https://packages.microsoft.com/keys/microsoft.asc
sudo rpm -v --import https://download.sublimetext.com/sublimehq-rpm-pub.gpg
sudo sh -c 'echo -e "[code]\nname=Visual Studio Code\nbaseurl=https://packages.microsoft.com/yumrepos/vscode\nenabled=1\ngpgcheck=1\ngpgkey=https://packages.microsoft.com/keys/microsoft.asc" > /etc/yum.repos.d/vscode.repo'

sudo dnf install -y dnf-plugin-config-manager fedora-workstation-repositories
sudo dnf config-manager --set-enabled google-chrome
sudo dnf config-manager --add-repo https://download.sublimetext.com/rpm/stable/x86_64/sublime-text.repo

pastewka

# Copyright (c) 2015 Lars Pastewka
#
# Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files
# (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge,
# publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do
# so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF

pastewka

#! /bin/sh

cat log.lammps | sed -n "/Step/,/Loop time/p" | head -n-1 > thermo.out

pastewka

#! /bin/bash

WINDOWS_ROOT=$1

cd $WINDOWS_ROOT/Windows/System32/config

# Get MAC address of Bluetooth module
for mac in /var/lib/bluetooth/??:??:??:??:??:??; do
    btmacwin=$(basename ${mac} | sed 's/://g' |  awk '{print tolower($0)}')
    btdir=${mac}

pastewka

"""Simple Gaussian process classification example (Laplacian approximation)"""

import numpy as np
import scipy.special

import matplotlib.pyplot as plt


class ProbitLikelihood:
    """

pastewka

"""Simple Gaussian process regression example"""

import numpy as np

import matplotlib.pyplot as plt


def kernel(x1, x2, length_scale=1, signal_variance=1):
    return signal_variance*np.exp(-(x1-x2)**2 / (2*length_scale**2))

pastewka

#Label line with line2D label data
def label_line(line,x,label=None,rotation=None,**kwargs):

    ax = line.axes
    xdata = line.get_xdata()
    ydata = line.get_ydata()

    if (x < xdata[0]) or (x > xdata[-1]):
        print('x label location is outside data range!')
        return

pastewka

# Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files
# (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge,
# publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do
# so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE
# FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN

pastewka

import glob
import os
from ase.io import NetCDFTrajectory, read

fns = glob.glob('/work/ws/nemo/fr_rj1011-18.07.03-GAP_low_density-0/18.10.15-aC_GAP-quasistatic-bond_breaking_B/quasistatic-2.7_B_*.lammps')

nc = NetCDFTrajectory('quasistatic_2.7.nc', 'w')

fns = sorted(fns, key=lambda x: int(os.path.basename(x).replace('quasistatic-2.7_B_', '').replace('.lammps', '')))
for fn in fns:

pastewka

Place fonts in $HOME/.fonts or other directory of choice.

Create file $HOME/.config/fontconfig/fonts.conf with following content:

<?xml version="1.0"?>
<!DOCTYPE fontconfig SYSTEM "fonts.dtd">
<!-- ~/.fonts.conf for per-user font configuration -->
<fontconfig>
<dir>~/.fonts</dir>
</fontconfig>