pat-s

#### blockCV old

library(raster)
x <- raster(system.file("external/rlogo.grd", package="raster")) 
resolution = 10000
ybin = 3
xbin = 3

pat-s

export TFC_TOKEN=<CHANGEME> # TF cloud token
export WORKSPACE_ID=<CHANGEME> # old TF cloud Workspace ID

export WORKSPACE_ID_NEW=<CHANGEME> # new OTF workspace ID
export TOKEN_REMOTE_BACKEND=<CHANGEME> # OTF token
export REMOTE_BACKEND_URL=<CHANGEME> # OTF URL

### START
HTTP_RESPONSE=$(curl \
	--header "Authorization: Bearer "$TFC_TOKEN"" \

pat-s

### DEPENDENCIES
# - curl
# - jq

### VARIABLES
export REPO_NAME=FIXME
export ORG_NAME=FIXME
export SLEEP_TIME=15
export TOKEN=FIXME # empty scopes are sufficient

pat-s

FROM ubuntu:focal

# set ENV variables
ENV LC_ALL=en_US.UTF-8
ENV LANG=en_US.UTF-8
ENV TERM=xterm
ENV DEBIAN_FRONTEND=noninteractive

# locale ----------------------------------------------------------------------#
RUN apt update \

pat-s

# because base::file.rename() is a pain across OS
requireNamespace("fs", quietly = TRUE)

# download cluto zip file
temp = tempfile()
utils::download.file("http://glaros.dtc.umn.edu/gkhome/fetch/sw/cluto/cluto-2.1.2a.zip", temp, quiet = TRUE)

utils::unzip(temp, files = c("cluto-2.1.2/Linux-x86_64/vcluster", "cluto-2.1.2/MSWIN-x86_64/vcluster.exe"))
unlink(temp)

pat-s

library(tidyverse)
library(htmltab)
library(lubridate)
library(pkgsearch)

list_repos = httr::content(httr::GET("https://api.github.com/orgs/mlr-org/repos?per_page=100"))
list_repos_v = unlist(lapply(list_repos, function(x) x$name))
repos_mlr3 = grep("mlr3", list_repos_v, value = TRUE)

# add non-mlr3 repos

pat-s

## ----mlr3-config, echo = FALSE---------------------------------------------------------------------------
lgr::get_logger("bbotk")$set_threshold("warn")
lgr::get_logger("mlr3")$set_threshold("warn")


## ----example, fig.show="hide"----------------------------------------------------------------------------
library("mlr3verse", quietly = TRUE)
set.seed(42)

# example tasks

pat-s

{
  "version": "0.9.0",
  "description": "The R installation manage: Install, remove, configure R versions.",
  "homepage": "https://github.com/pat-s/rcli",
  "license": "LGPL-3",
  "url": "https://github.com/pat-s/rcli/releases/download/0.9.0/rcli",
  "bin": "rcli",
  "checkver": "github"
}

pat-s

if (requireNamespace(c("callr", "git2r", "gert", "cli"), quietly = TRUE)) {
  has_git = git2r::in_repository()
  if (has_git && Sys.getenv("RSTUDIO") == 1) {
    cli::cli_text("Running 
      {.code gert::git_pull(verbose = FALSE, prune = TRUE, rebase = TRUE)} 
      in the background.")
    callr::r_bg(function() {
      gert::git_pull(verbose = FALSE, prune = TRUE, rebase = TRUE)
    },
    stdout = out <- tempfile(), stderr = err <- tempfile())$wait()

pat-s

if (requireNamespace(c("callr", "git2r"), quietly = TRUE)) {
  has_git = git2r::in_repository()
  if (has_git) {
    message("Running `git2r::pull()` in the background.")
    callr::r_bg(function() {git2r::pull()})$wait()$get_result()
  }
}