pcomans

f = File.open("A-large-practice.in")

num_testcases = f.readline.strip.to_i
casenumber = 1

num_testcases.times do

  credit = f.readline.strip.to_i
  num_items = f.readline.strip.to_i
  prices = f.readline.split(' ').collect {|x| x.to_i}

pcomans

f = File.open("B-large-practice.in")

num_testcases = f.readline.to_i

(1..num_testcases).each do |casenumber|
  
  words = f.readline.split(' ')  
  print "Case #" + casenumber.to_s + ": "
  words.reverse.each { |word| print word + " "}
  print "\n"

pcomans

import static org.junit.Assert.assertEquals;

import java.util.ArrayList;
import java.util.Arrays;
import java.util.Iterator;
import java.util.List;

import org.junit.Test;

class Merger {

pcomans

require 'rubygems'
require 'bio'

seq = Bio::Sequence::NA.new("atgcagctctttgtccgcgcccaggagctacacaccttcgaggtgaccggccaggaaacggtcgcccagatcaaggctcatgtagcctcactggagggcattgccccggaagatcaagtcgtgctcctggcaggcgcgcccctggaggatgaggccactctgggccagtgcggggtggaggccctgactaccctggaagtagcaggccgcatgcttggaggtaaagtccatggttccctggcccgtgctggaaaagtgagaggtcagactcctaaggtggccaaacaggagaagaagaagaagaagacaggtcgggctaagcggcggatgcagtacaaccggcgctttgtcaacgttgtgcccacctttggcaagaagaagggccccaatgccaactcttaa")

remote = Bio::Blast.remote('blastn', 'genes-nt', '-e 0.01')
blobj = remote.query(seq)
blobj.each_hit do |hit|
  puts "#{hit.target_def} #{hit.evalue}"
end

pcomans

require 'rubygems'
require 'bio'

blaster = Bio::Blast.local("tblastx", "/Users/philipp/Dropbox/IDP/ESTs/Ephydatia_muelleri/Ephydatia_muelleri", "", "/Users/philipp/Downloads/blast-2.2.25/bin/blastall")
sequence = ">EM1c1_molpal [Ephydatia_muelleri]\nGTTTTGTACAAGAAGACCATTCATAAGAACAATATTGATGACCACACAGTACACTAGAAG"
fasta = Bio::FastaFormat.new(sequence)
result = fasta.query(blaster)
puts result.hits.length
fasta.entry()
result = fasta.query(blaster)

pcomans

#!/usr/bin/bash

echo $*
RUBY_VERSION=/usr/bin/env ruby -v
echo $RUBY_VERSION

if [[ $RUBY_VERSION == "jruby*" ]];
then
    echo "JRUBY\!"
else

pcomans

if RUBY_PLATFORM =~ /java/
  puts "JRUBY!"
  command = "ruby -J-Xmx2g " + File.join(File.dirname(__FILE__), '..', 'lib/hello.rb')
  system(command)
else
  puts "MRI"
  command = "ruby " + File.join(File.dirname(__FILE__), '..', 'lib/hello.rb')
  system(command)
end

pcomans

JRUBY!
warning: -J-Xmx2g argument ignored (launched in same VM?)
Hello
Still there?

pcomans

#!/usr/bin/bash

params=$*
ruby_version=$(ruby -v)
echo $ruby_version
dir=$(dirname $0)
if [[ $ruby_version == jruby* ]];
then
    ruby "-J-Xmx2g" "${dir}/lib/annotate-gff.rb" ${params}
else

pcomans

#!/Users/philipp/.rvm/rubies/ruby-1.9.2-p180/bin/ruby
#
# This file was generated by RubyGems.
#
# The application 'annotate-gff' is installed as part of a gem, and
# this file is here to facilitate running it.
#

require 'rubygems'