Patrick de Perio pdeperio
pdeperio
/ 160501_1733_18792607.log
Created
May 1, 2016 19:01
pax jobs still crashing on midway (AttributeError: 'float' object has no attribute 'typecode')
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| discarding /project/lgrandi/anaconda3/envs/pax_head/bin from PATH | |
| prepending /project/lgrandi/anaconda3/envs/pax_head/bin to PATH | |
| Activate: ROOT has been sourced. Environment settings are ready. | |
| ROOTSYS=/project/lgrandi/anaconda3/envs/pax_head | |
| python /project/lgrandi/deployHQ/cax/cax/tasks/process.py 160501_1733 /project/lgrandi/xenon1t/160501_1733 midway-login1 | |
| processor MainProcess L89 INFO This is PAX version 4.9.1, running with configuration for XENON1T. | |
| ReadZipped MainProcess L101 INFO InputFromFolder: Selecting file /project/lgrandi/xenon1t/160501_1733/XENON1T-0-000000000-000000999-000001000.zip (number 1/17 in fo | |
| lder) for reading | |
| #error "You need a ISO C conforming compiler to use the glibc headers" | |
| *** Interpreter error recovered *** |
pdeperio
/ 160501_1343_18791929.log
Last active
May 1, 2016 15:44
Another strange ending for multicore on Midway
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| nprocs = 4 | |
| discarding /project/lgrandi/anaconda3/envs/pax_head/bin from PATH | |
| prepending /project/lgrandi/anaconda3/envs/pax_head/bin to PATH | |
| Activate: ROOT has been sourced. Environment settings are ready. | |
| ROOTSYS=/project/lgrandi/anaconda3/envs/pax_head | |
| python /project/lgrandi/deployHQ/cax/cax/tasks/process.py 160501_1343 /project/lgrandi/xenon1t/160501_1343 midway-login1 | |
| processor MainProcess L89 INFO This is PAX version 4.9.1, running with configuration for XENON1T. | |
| processing 160501_1343 /project/lgrandi/xenon1t/160501_1343 | |
| ReadZipped MainProcess L101 INFO InputFromFolder: Selecting file /project/lgrandi/xenon1t/160501_1343/XENON1T-0-000000000-000000999-000001000.zip (number 1/45 in folder) for reading |
pdeperio
/ 160501_1331_18791928.log
Created
May 1, 2016 15:30
Crash on Midway with 4 cores (submitted from process.py)
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| nprocs = 4 | |
| discarding /project/lgrandi/anaconda3/envs/pax_head/bin from PATH | |
| prepending /project/lgrandi/anaconda3/envs/pax_head/bin to PATH | |
| Activate: ROOT has been sourced. Environment settings are ready. | |
| ROOTSYS=/project/lgrandi/anaconda3/envs/pax_head | |
| python /project/lgrandi/deployHQ/cax/cax/tasks/process.py 160501_1331 /project/lgrandi/xenon1t/160501_1331 midway-login1 | |
| processor MainProcess L89 INFO This is PAX version 4.9.1, running with configuration for XENON1T. | |
| processing 160501_1331 /project/lgrandi/xenon1t/160501_1331 | |
| ReadZipped MainProcess L101 INFO InputFromFolder: Selecting file /project/lgrandi/xenon1t/160501_1331/XENON1T-0-000000000-000000999-000001000.zip (number 1/180 in folder) for reading |
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| import sys | |
| import datetime | |
| import hashlib | |
| import subprocess | |
| from cax import qsub, config | |
| from cax.task import Task | |
| # Obtain pax repository hash | |
| def get_pax_hash(pax_version): |
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| [ | |
| { | |
| "name": "eb0", | |
| "hostname": "eb0", | |
| "receive": null, | |
| "directory": "/data/xenon1t_data/", | |
| "upload_options": [], | |
| "download_options": [] | |
| }, | |
| { |
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| root : INFO put: /project/lgrandi/xenon1t/160414_1156 to /xenon/xenon1t_test/160414_1156 | |
| paramiko.transport: DEBUG [chan 0] Max packet in: 32768 bytes | |
| paramiko.transport: DEBUG [chan 0] Max packet out: 32768 bytes | |
| paramiko.transport: DEBUG Secsh channel 0 opened. | |
| paramiko.transport: DEBUG [chan 0] Sesch channel 0 request ok | |
| paramiko.transport: DEBUG Rekeying (hit 32668 packets, 536872688 bytes sent) | |
| paramiko.transport: DEBUG kex algos:['diffie-hellman-group-exchange-sha256', 'diffie-hellman-group-exchange-sha1', 'diffie-hellman-group14-sha1', 'diffie-hellman-group1-sha1'] server key:['ssh-rsa', 'ssh-dss'] client encrypt:['aes128-ctr', 'aes192-ctr', 'aes256-ctr', 'arcfour256', 'arcfour128', 'aes128-cbc', '3des-cbc', 'blowfish-cbc', 'cast128-cbc', 'aes192-cbc', 'aes256-cbc', 'arcfour', 'rijndael-cbc@lysator.liu.se'] server encrypt:['aes128-ctr', 'aes192-ctr', 'aes256-ctr', 'arcfour256', 'arcfour128', 'aes128-cbc', '3des-cbc', 'blowfish-cbc', 'cast128-cbc', 'aes192-cbc', 'aes256-cbc' |
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| root : INFO put: /project/lgrandi/xenon1t/160331_1207 to /xenon/xenon1t_test/160331_1207 | |
| paramiko.transport: DEBUG [chan 0] Max packet in: 32768 bytes | |
| paramiko.transport: DEBUG [chan 0] Max packet out: 32768 bytes | |
| paramiko.transport: DEBUG Secsh channel 0 opened. | |
| paramiko.transport: DEBUG [chan 0] Sesch channel 0 request ok | |
| paramiko.transport: DEBUG [chan 0] EOF sent (0) | |
| paramiko.transport: DEBUG EOF in transport thread | |
| SCPPush : DEBUG SCP done, telling run database | |
| SCPPush : INFO Transfer complete | |
| root : DEBUG loading /home/pdeperio/160426-cax_tests/cax/lib/python3.4/site-packages/cax-0.1.0-py3.4.egg/cax/cax.json |
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| $ gfal-copy -vvv -r -p srm://srm1.rcc.uchicago.edu:8443/srm/v2/server?SFN=/project/lgrandi/xenon1t/160315_1438 srm://ceph-se.osgconnect.net:8443/srm/v2/server?SFN=/cephfs/srm/xenon/xenon1t/160315_1438 | |
| DEBUG GFAL_CONFIG_DIR env var found, try to load configuration from /cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.3/3.3.11/el6-x86_64/etc/gfal2.d | |
| DEBUG try to load configuration file /cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.3/3.3.11/el6-x86_64/etc/gfal2.d/bdii.conf ... | |
| DEBUG try to load configuration file /cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.3/3.3.11/el6-x86_64/etc/gfal2.d/srm_plugin.conf ... | |
| DEBUG try to load configuration file /cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.3/3.3.11/el6-x86_64/etc/gfal2.d/gsiftp_plugin.conf ... | |
| DEBUG try to load configuration file /cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.3/3.3.11/el6-x86_64/etc/gfal2.d/xrootd_plugin.conf ... | |
| DEBUG try to load configuration file /cvmfs/oasis.opensciencegrid.org/mis/osg- |
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| SCPPull : DEBUG Notifying run database | |
| Traceback (most recent call last): | |
| File "/stash2/project/@xenon1t/anaconda3/envs/pax_head/bin/cax-single", line 9, in <module> | |
| load_entry_point('cax==0.1.0', 'console_scripts', 'cax-single')() | |
| File "/stash2/project/@xenon1t/anaconda3/envs/pax_head/lib/python3.4/site-packages/cax-0.1.0-py3.4.egg/cax/main.py", line 8, in single | |
| main(run_once = True) | |
| File "/stash2/project/@xenon1t/anaconda3/envs/pax_head/lib/python3.4/site-packages/cax-0.1.0-py3.4.egg/cax/main.py", line 44, in main | |
| task.go() | |
| File "/stash2/project/@xenon1t/anaconda3/envs/pax_head/lib/python3.4/site-packages/cax-0.1.0-py3.4.egg/cax/task.py", line 24, in go | |
| self.each_run() |
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| (pax)hattorikun:PaxROOTExample pdeperio$ root -b | |
| dyld: Symbol not found: _CGLGetCurrentContext | |
| Referenced from: /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo | |
| Expected in: /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL | |
| in /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo |