philippotto

git config --global alias.l "log --color --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit"

philippotto

window.webknossos.apiReady(2).then(async (api) => {
    const welcomeMessage =
    `Mr. Motta and Mr. Boergens proudly present
    The webKnossos Merger Mode Suite

    [8] Shuffles segmentation color of current tree
    [9] Toggles segment opacity
    [right-click] Adds node and makes segment pink
    [delete] Removes node and restores original segment color

philippotto

window.webknossos.apiReady(3).then(async (api) => {
    const welcomeMessage =
    `Mr. Motta and Mr. Boergens proudly present
    The webKnossos Merger Mode Suite (version 23.04.2017)

    [8] Shuffles segmentation color of current tree
    [9] Toggles segment opacity
    [right-click] Adds node and makes segment pink
    [delete] Removes node and restores original segment color

philippotto

window.webknossos.apiReady(3).then(async (api) => {
    api.utils.registerKeyHandler("7", () => { alert("You pressed 7"); });
});

philippotto

window.webknossos.apiReady(3).then(async (api) => {
    api.utils.registerKeyHandler("8", () => { alert("You pressed 8"); });
});

philippotto

async function applyMapping(api) {
	const trees = api.tracing.getAllTrees();
	const currentTreeId = api.tracing.getActiveTreeId();
	const currentTree = trees[currentTreeId];

	const segmentationName = api.data.getVolumeTracingLayerName()
	const cellIdSet = new Set()

	for (const node of currentTree.nodes.values()) {
		const cellId = await api.data.getDataValue(segmentationName, node.position);

philippotto

import logging
from pathlib import Path

import webknossos as wk
from webknossos.annotation import Annotation
from webknossos.dataset import MagView
from webknossos.geometry import BoundingBox, Mag

def merge_with_fallback_layer(
    output_path: Path,