Po-E Li poeli

## extract_read_name_from_fastq.sh
#!/bin/sh
awk 'NR%4==1 {print substr($1,2)}'

## install_docker.sh
# Install and Docker on CentOS 7
# Reference:
# https://www.digitalocean.com/community/tutorials/how-to-install-and-use-docker-on-centos-7

sudo yum check-update
# It will add the official Docker repository, download the latest version of Docker, and install it:
curl -fsSL https://get.docker.com/ | sh

# start the Docker daemon
sudo systemctl start docker

## exfat.sh
# ExFAT support on CentOS7
yum install -y http://li.nux.ro/download/nux/dextop/el7/x86_64/nux-dextop-release-0-1.el7.nux.noarch.rpm
yum install exfat-utils fuse-exfat

# mount disk
# $sudo fdisk -l
# $sudo mount /dev/sda1 /media/

## volume_restore.sh
#!/bin/bash
# Restore a single volume from a tar archive to a Docker container
NEW_CONTAINER_NAME=$1
BACKUPTAR=$2

usage() {
  echo "Usage: $0 [container name] ([backup.tar])"
  exit 1
}

## volume_backup.sh
#!/bin/bash
# Backup a single volume from a Docker container to a tar archive.

CONTAINER_NAME=$1
VOLUME_NAME=$2
BACKUPTAR=$3

usage() {
  echo "Usage: $0 [container name] [volume name] ([backup.tar])"
  exit 1

## split_multi_fasta.sh
#USAGE: split_multi_fasta.sh *.fasta
cat $1 | awk -F'>' '/^>/ {match($2,/^(\S+)/,a); FN=a[1]".fa"; print > FN;next;} {print >> FN; close(FN)}'

## socket5_proxy.sh
# quick socket5 proxy
# set socket5 proxy to $SERVER:$PORT at the browser
ssh -D $PORT -f -C -q -N $SERVER
	# Install and Docker on CentOS 7
	# Reference:
	# https://www.digitalocean.com/community/tutorials/how-to-install-and-use-docker-on-centos-7

	sudo yum check-update
	# It will add the official Docker repository, download the latest version of Docker, and install it:
	curl -fsSL https://get.docker.com/ \| sh

	# start the Docker daemon
	sudo systemctl start docker
	# ExFAT support on CentOS7
	yum install -y http://li.nux.ro/download/nux/dextop/el7/x86_64/nux-dextop-release-0-1.el7.nux.noarch.rpm
	yum install exfat-utils fuse-exfat

	# mount disk
	# $sudo fdisk -l
	# $sudo mount /dev/sda1 /media/
	#!/bin/bash
	# Restore a single volume from a tar archive to a Docker container
	NEW_CONTAINER_NAME=$1
	BACKUPTAR=$2

	usage() {
	echo "Usage: $0 [container name] ([backup.tar])"
	exit 1
	}
	#!/bin/bash
	# Backup a single volume from a Docker container to a tar archive.

	CONTAINER_NAME=$1
	VOLUME_NAME=$2
	BACKUPTAR=$3

	usage() {
	echo "Usage: $0 [container name] [volume name] ([backup.tar])"
	exit 1
	#USAGE: split_multi_fasta.sh *.fasta
	cat $1 \| awk -F'>' '/^>/ {match($2,/^(\S+)/,a); FN=a[1]".fa"; print > FN;next;} {print >> FN; close(FN)}'
	# quick socket5 proxy
	# set socket5 proxy to $SERVER:$PORT at the browser
	ssh -D $PORT -f -C -q -N $SERVER