CrossValTesting.ipynb

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  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
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   },
   "outputs": [],
   "source": [
    "import os\n",
    "os.chdir(os.path.dirname(os.getcwd()))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from skmultilearn.problem_transform.br import BinaryRelevance"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "from sklearn.datasets import fetch_rcv1\n",
    "from sklearn import cross_validation\n",
    "from sklearn.metrics import accuracy_score\n",
    "from sklearn.metrics import f1_score\n",
    "from sklearn.metrics import precision_score\n",
    "\n",
    "# actual estimators\n",
    "from sklearn.naive_bayes import GaussianNB"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "rvc1 = fetch_rcv1()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "clf = BinaryRelevance(GaussianNB())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "ename": "MemoryError",
     "evalue": "",
     "output_type": "error",
     "traceback": [
      "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[1;31mMemoryError\u001b[0m                               Traceback (most recent call last)",
      "\u001b[1;32m<ipython-input-6-32ec54c51c72>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m()\u001b[0m\n\u001b[0;32m      1\u001b[0m cv = cross_validation.ShuffleSplit(rvc1.data.shape[0], n_iter=3,\n\u001b[0;32m      2\u001b[0m                                     test_size=0.3, random_state=0)\n\u001b[1;32m----> 3\u001b[1;33m scores = cross_validation.cross_val_score(clf, rvc1.data.toarray(), rvc1.target,\n\u001b[0m\u001b[0;32m      4\u001b[0m                                             cv=cv, scoring='f1_macro')\n",
      "\u001b[1;32m/home/felipe/auto-tagger/venv2/local/lib/python2.7/site-packages/scipy/sparse/compressed.pyc\u001b[0m in \u001b[0;36mtoarray\u001b[1;34m(self, order, out)\u001b[0m\n\u001b[0;32m    947\u001b[0m     \u001b[1;32mdef\u001b[0m \u001b[0mtoarray\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0morder\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mNone\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mout\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mNone\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    948\u001b[0m         \u001b[1;34m\"\"\"See the docstring for `spmatrix.toarray`.\"\"\"\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 949\u001b[1;33m         \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mtocoo\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mcopy\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mFalse\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mtoarray\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0morder\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0morder\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mout\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mout\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    950\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    951\u001b[0m     \u001b[1;31m##############################################################\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m/home/felipe/auto-tagger/venv2/local/lib/python2.7/site-packages/scipy/sparse/coo.pyc\u001b[0m in \u001b[0;36mtoarray\u001b[1;34m(self, order, out)\u001b[0m\n\u001b[0;32m    272\u001b[0m     \u001b[1;32mdef\u001b[0m \u001b[0mtoarray\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0morder\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mNone\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mout\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mNone\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    273\u001b[0m         \u001b[1;34m\"\"\"See the docstring for `spmatrix.toarray`.\"\"\"\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 274\u001b[1;33m         \u001b[0mB\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_process_toarray_args\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0morder\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mout\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    275\u001b[0m         \u001b[0mfortran\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mint\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mB\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mflags\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mf_contiguous\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    276\u001b[0m         \u001b[1;32mif\u001b[0m \u001b[1;32mnot\u001b[0m \u001b[0mfortran\u001b[0m \u001b[1;32mand\u001b[0m \u001b[1;32mnot\u001b[0m \u001b[0mB\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mflags\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mc_contiguous\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m/home/felipe/auto-tagger/venv2/local/lib/python2.7/site-packages/scipy/sparse/base.pyc\u001b[0m in \u001b[0;36m_process_toarray_args\u001b[1;34m(self, order, out)\u001b[0m\n\u001b[0;32m    798\u001b[0m             \u001b[1;32mreturn\u001b[0m \u001b[0mout\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    799\u001b[0m         \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 800\u001b[1;33m             \u001b[1;32mreturn\u001b[0m \u001b[0mnp\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mzeros\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mshape\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mdtype\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mdtype\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0morder\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0morder\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    801\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    802\u001b[0m     \u001b[1;32mdef\u001b[0m \u001b[0m__numpy_ufunc__\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mfunc\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mmethod\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mpos\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0minputs\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;31mMemoryError\u001b[0m: "
     ]
    }
   ],
   "source": [
    "cv = cross_validation.ShuffleSplit(rvc1.data.shape[0], n_iter=3,\n",
    "                                    test_size=0.3, random_state=0)\n",
    "scores = cross_validation.cross_val_score(clf, rvc1.data.toarray(), rvc1.target,\n",
    "                                            cv=cv, scoring='f1_macro')"
   ]
  }
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