View markdown_alumni_from_html.js
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var els = Array.from(document.getElementsByTagName('tr')); | |
els.shift(); | |
var processed = [] | |
for (let el of els) { | |
if (!el.hasChildNodes()) { | |
continue; | |
} |
View isoform_filter.py
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'''Simplistic isoform filtering.''' | |
from Levenshtein import distance | |
import math | |
for sequence, item in d.items(): | |
row = [] | |
for protein in item: | |
min_distance = math.inf | |
symbol = protein[2] |
View cell_line_snip.py
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sorted_data = sorted(data, key=lambda x: x['Sample name']) | |
by_sample_name = itertools.groupby(sorted_data, key=lambda x: x.get('Sample name')) | |
grouped = [] | |
for name, g in by_sample_name: | |
d = list(g) | |
grouped.append( | |
'\t'.join([ | |
name, | |
str(len(d)), | |
','.join(set([x['Primary site'] for x in d])), |
View hide_singleton_20s.js
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$ = requirejs('jquery'); | |
var $rows = $('tbody tr').slice(2), | |
group = null; | |
$rows.each(function() { | |
var $this = $(this), | |
id = $this.find('td').eq(0).text().trim(); | |
if (id) { |
View get-protein-masses.js
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(function() {var map={},url=document.location.href.split("/").slice(0,-1).concat(["dta","ipi_name.table"]).join("/");$.get(url).done(function(t){for(var e,n=[],a=/(\w+).+\n?/g;null!==(e=a.exec(t));)n.push(e[1]);n=n.splice(1);for(var r=[];n.length;){for(var i="",o=n.splice(0,10),l=0,c=o.length;c>l;l++)i+="accession:"+o[l]+" OR ";i=i.slice(0,-4);var s=$.get("http://www.uniprot.org/uniprot/",{query:i,columns:"id,mass",format:"tab"});s.done(function(t){for(var n=/(\w+)\t([\w,]+)\n?/g;null!==(e=n.exec(t));)map[e[1]]=e[2]}),r.push(s)}$(function(){{var t=$("tbody tr"),e=t.eq(0).find("th:last");!$.trim(t.eq(0).children("td").eq(1).text())}e.after(e.clone().text("mass")),t.eq(1).find("th:last").after(e.clone().empty()),$("colgroup:last").after("<colgroup span=1 />"),t=t.slice(2),t.append("<td />"),$.when.apply(this,r).done(function(){t.each(function(){var t=$(this);if($.trim(t.find("td:first").text())){var e=$.trim(t.find("td:eq(1)").text());map.hasOwnProperty(e)&&t.find("td:last").text(map[e])}})})})});})() |
View toggle-peptides.js
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$('tbody tr').slice(2).each(function() { | |
var $this = $(this); | |
if (!$.trim($this.find('td:first').text())) { | |
$this.toggle(); | |
} | |
}); |
View gist:5297815
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/* http://keith-wood.name/svg.html | |
SVG for jQuery v1.4.5. | |
Written by Keith Wood (kbwood{at}iinet.com.au) August 2007. | |
Dual licensed under the GPL (http://dev.jquery.com/browser/trunk/jquery/GPL-LICENSE.txt) and | |
MIT (http://dev.jquery.com/browser/trunk/jquery/MIT-LICENSE.txt) licenses. | |
Please attribute the author if you use it. */ | |
(function($) { // Hide scope, no $ conflict | |
/* SVG manager. |
View clean_mzxmls
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#!/bin/bash | |
find ~ -type f -name "*.mzXML" -not -path "save-me" | |
echo delete me? \[y/n\]? | |
read yesno | |
if [[ $yesno == 'y' ]]; then | |
find ~ -type f -name "*.mzXML" -not -path "save-me" -delete | |
fi |
View gist:4587174
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var qr_repost=false;var qr_errors_shown=false;var qr_active=false;var qr_ajax=null;var qr_postid=null;var qr_withquote=null;var qr_imgsrc="";var clickedelm=false;var qr_require_click=false;var QR_EditorID="vB_Editor_QR";if(typeof(vB_XHTML_Ready)!="undefined"){vB_XHTML_Ready.subscribe(qr_init)}function qr_init(){if(typeof(vBulletin.attachinfo)=="undefined"){vBulletin.attachinfo={posthash:"",poststarttime:""}}if(fetch_object("quick_reply")){qr_disable_controls();qr_init_buttons(fetch_object("posts"))}}function qr_init_buttons(D){var C=fetch_tags(D,"a");for(var B=0;B<C.length;B++){if(C[B].id&&(C[B].id.substr(0,3)=="qr_"||C[B].id.substr(0,5)=="qrwq_")){YAHOO.util.Event.on(C[B],"click",qr_newreply_activate,this)}}var A=["newreplylink_top","newreplylink_bottom"];YAHOO.util.Event.on(A,"click",qr_replytothread_activate,this);YAHOO.util.Event.on(A,"dblclick",function(E){window.location=this.href},this)}function qr_disable_controls(){if(require_click){fetch_object("qr_postid").value=0;vB_Editor[QR_EditorID].disable_edi |
View gist:4587150
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var qr_repost = false; | |
var qr_errors_shown = false; | |
var qr_active = false; | |
var qr_ajax = null; | |
var qr_postid = null; | |
var qr_withquote = null; | |
var qr_imgsrc = ""; | |
var clickedelm = false; | |
var qr_require_click = false; | |
var QR_EditorID = "vB_Editor_QR"; |
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