rec3141

#!/bin/bash

Search=$1

grep -i $Search FOAM-onto_rel1.tsv > $Search.ont
grep -i $Search FOAM-onto_rel1.tsv | cut -f5 > $Search.ko
wc -l $Search.ko
rm $Search.acc
	grep -A1 -f $Search.ko ./../FOAM/FOAM-hmm_rel1a_switch.hmm | grep NAME | tr -s ' ' | cut -f2 -d' ' | sort -u > $Search.acc
wc -l $Search.acc

rec3141

for FILE in *.tsv; do 
  LI=`grep -v '^#' $FILE | wc -l`; 
  SEQS=`gunzip -c ./../NPRB/$F1.faa.gz | grep -c '^>'`; 
  BP=`gunzip -c ./../NPRB/$F1.faa.gz | grep -v '^>' | wc -b`; 
  echo -e "$FILE\t$LI" >> target_hits.txt; 
done

rm target_hits2.txt;

for FILE in *.tsv; do 

rec3141

ps -axeo pid,etime,command | awk '$2~/^0[1234]-/ && $0~/COMMAND/ { print $1 }' | xargs kill