Robert T. McGibbon rmcgibbo
rmcgibbo
/ free-slots.py
Created
September 24, 2014 21:03
Summarize free slots on PBS queues [script]
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| #!/usr/bin/python | |
| from __future__ import division, print_function | |
| import subprocess | |
| import xml.etree.ElementTree as ET | |
| from collections import defaultdict, namedtuple | |
| status = namedtuple('status', ['properties', 'np_alloc', 'np_total']) | |
| def collect(): | |
| xmldata = subprocess.Popen(['/usr/bin/pbsnodes', '-x'], stdout=subprocess.PIPE).communicate()[0] | |
| root = ET.fromstring(xmldata) |
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| #!/usr/bin/python | |
| import subprocess | |
| from collections import defaultdict | |
| from collections import namedtuple | |
| from distutils.spawn import find_executable | |
| import xml.etree.ElementTree as ET | |
| status = namedtuple('status', ['queue', 'np_alloc', 'np_total']) | |
| QHOST_BIN = find_executable('qhost') |
rmcgibbo
/ testing-error-bars.ipynb
Last active
August 29, 2015 14:11
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| import time | |
| import numpy as np | |
| from pyhmc.fftutils import next_fast_fft | |
| ns = np.linspace(2, 20000).astype(np.int) | |
| t1, t2 = [], [] | |
| for n in ns: | |
| x = np.random.randn(n) | |
| start = time.clock() | |
| f = np.fft.fft(x) |
rmcgibbo
/ time.ino
Created
January 27, 2015 07:18
Macro to set the time on an ardunio using https://github.com/PaulStoffregen/Time from the __DATE__ and __TIME__ preprocessor macros.
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| #define SET_TIME() (setTime( \ | |
| ((__TIME__[0]-'0')*10 + (__TIME__[1]-'0')), \ | |
| ((__TIME__[3]-'0')*10 + (__TIME__[4]-'0')), \ | |
| ((__TIME__[6]-'0')*10 + (__TIME__[7]-'0')), \ | |
| ((__DATE__[4]-'0')*10 + (__DATE__[5]-'0')), \ | |
| (__DATE__ [2] == 'n' ? (__DATE__ [1] == 'a' ? 1 : 6) \ | |
| : __DATE__ [2] == 'b' ? 2 \ | |
| : __DATE__ [2] == 'r' ? (__DATE__ [0] == 'M' ? 3 : 4) \ | |
| : __DATE__ [2] == 'y' ? 5 \ | |
| : __DATE__ [2] == 'l' ? 7 \ |
rmcgibbo
/ Untitled.ipynb
Created
February 25, 2015 21:03
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rmcgibbo
/ gist:04aff4b94bb9503566bf
Created
March 2, 2015 22:21
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| $ doccheck numpy | |
| Could not locate executable icc | |
| Could not locate executable ecc | |
| can cast | |
| X ? b h i l q p B H I L Q P e f d g F D G S U V O M m | |
| ? 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 | |
| b 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 | |
| h 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 | |
| i 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 1 0 1 1 1 1 1 1 0 1 | |
| l 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 0 1 1 1 1 1 1 0 1 |
rmcgibbo
/ gist:42ba0b7d611ad5956225
Last active
August 29, 2015 14:16
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| $ doccheck scipy | |
| scipy.cluster.hierarchy:cophenet ( /home/rmcgibbo/projects/scipy/scipy/cluster/hierarchy.py ) | |
| Parameter is optional: Y | |
| scipy.cluster.hierarchy:dendrogram ( /home/rmcgibbo/projects/scipy/scipy/cluster/hierarchy.py ) | |
| Undocumented arguments: {'no_leaves', 'color_list'} | |
| scipy.cluster.hierarchy:pre_order ( /home/rmcgibbo/projects/scipy/scipy/cluster/hierarchy.py ) | |
| Parameter is optional: func |
rmcgibbo
/ gist:e17e967ec443aa602d8f
Last active
August 29, 2015 14:20
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| $ cat test1.py | |
| import gzip | |
| from rdkit import Chem | |
| mol = Chem.MolFromSmiles('CC(=O)OC1=CC=CC=C1C(=O)O') | |
| f = gzip.open('out', 'w') | |
| w = Chem.SDWriter(f) | |
| w.write(mol) | |
| w.flush() | |
| f.close() |
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| *DECK EXPREL | |
| FUNCTION EXPREL (X) | |
| C***BEGIN PROLOGUE EXPREL | |
| C***PURPOSE Calculate the relative error exponential (EXP(X)-1)/X. | |
| C***LIBRARY SLATEC (FNLIB) | |
| C***CATEGORY C4B | |
| C***TYPE SINGLE PRECISION (EXPREL-S, DEXPRL-D, CEXPRL-C) | |
| C***KEYWORDS ELEMENTARY FUNCTIONS, EXPONENTIAL, FIRST ORDER, FNLIB | |
| C***AUTHOR Fullerton, W., (LANL) | |
| C***DESCRIPTION |