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Created May 10, 2016

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Nextflow ignite rebalancing issues
May-10 16:50:54.334 [main] DEBUG nextflow.cli.Launcher - $> /home/robsyme/bin/nextflow run -resume -process.executor ignite main.nf
May-10 16:50:54.375 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.18.3
May-10 16:50:54.375 [main] INFO nextflow.cli.CmdRun - Launching main.nf
May-10 16:50:54.387 [main] DEBUG nextflow.config.ConfigBuilder - Found config home: /home/robsyme/.nextflow/config
May-10 16:50:54.389 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/robsyme/.nextflow/config
May-10 16:50:54.603 [main] DEBUG nextflow.config.ConfigBuilder - Setting config profile: 'standard'
May-10 16:50:54.659 [main] DEBUG nextflow.Session - Session uuid: 71c4589d-7aba-4d95-a961-ec745527a86b
May-10 16:50:54.660 [main] DEBUG nextflow.Session - Executor pool size: 12
May-10 16:50:54.669 [main] DEBUG nextflow.cli.CmdRun -
Version: 0.18.3 build 3712
Modified: 09-05-2016 06:45 UTC (14:45 AWDT)
System: Linux 4.2.0-30-generic
Runtime: Groovy 2.4.5 on Java HotSpot(TM) 64-Bit Server VM 1.8.0_72-b15
Encoding: UTF-8 (UTF-8)
Process: 9715@ppgserver [127.0.1.1]
May-10 16:50:54.673 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/bin
May-10 16:50:54.674 [main] DEBUG nextflow.Session - Session start invoked
May-10 16:50:54.676 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start
May-10 16:50:54.676 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing
May-10 16:50:54.843 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
May-10 16:50:54.886 [main] DEBUG nextflow.processor.ProcessFactory - Discovered executor class: nextflow.executor.IgExecutor
May-10 16:50:54.932 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite
May-10 16:50:54.932 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite'
May-10 16:50:54.932 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor
May-10 16:50:54.938 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite
May-10 16:50:54.940 [main] INFO nextflow.executor.Executor - [warm up] executor > ignite
May-10 16:50:54.944 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'ignite' > pollInterval: 5s; dumpInterval: 5m
May-10 16:50:54.949 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: TaskPollingMonitor
May-10 16:50:54.949 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: ignite)
May-10 16:50:54.952 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: ignite
May-10 16:50:54.981 [main] DEBUG nextflow.executor.IgConnector - Create Ignite master node
May-10 16:50:54.995 [main] DEBUG nextflow.file.FileHelper - Creating a file system instance for provider: IgFileSystemProvider
May-10 16:50:54.998 [main] DEBUG nextflow.daemon.IgGridFactory - Configuration properties for role: 'master' -- [:]
May-10 16:50:55.034 [main] DEBUG nextflow.daemon.IgGridFactory - Apache Ignite config > group name: nextflow
May-10 16:50:55.163 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Config URL: n/a
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Daemon mode: off
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS: Linux 4.2.0-30-generic amd64
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS user: robsyme
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Language runtime: Groovy
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM information: Java(TM) SE Runtime Environment 1.8.0_72-b15 Oracle Corporation Java HotSpot(TM) 64-Bit Server VM 25.72-b15
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM total memory: 7.0GB
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Remote Management [restart: off, REST: on, JMX (remote: off)]
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - IGNITE_HOME=null
May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM arguments: [-Xverify:none, -Djava.library.path=/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib, -Dcapsule.app=nextflow_0.18.3, -Djava.awt.headless=true, -Dcapsule.jar=/home/robsyme/.nextflow/framework/0.18.3/nextflow-0.18.3-one.jar]
May-10 16:50:55.165 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Configured caches ['ignite-marshaller-sys-cache', 'ignite-sys-cache', 'ignite-atomics-sys-cache', 'allSessions', 'igfs-data', 'igfs-meta']
May-10 16:50:55.167 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Local node user attribute [ROLE=master]
May-10 16:50:55.168 [pub-#6%nextflow%] WARN o.a.ignite.internal.GridDiagnostic - Initial heap size is 502MB (should be no less than 512MB, use -Xms512m -Xmx512m).
May-10 16:50:55.200 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Non-loopback local IPs: 134.7.57.219, 172.17.0.1, fe80:0:0:0:9a90:96ff:fed7:1714%eth0
May-10 16:50:55.200 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Enabled local MACs: 0242B0C3C633, 989096D71714
May-10 16:50:55.205 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - Configured plugins:
May-10 16:50:55.205 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - ^-- None
May-10 16:50:55.205 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor -
May-10 16:50:55.244 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - IPC shared memory server endpoint started [port=48100, tokDir=/tmp/ignite/ipc/shmem/96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e-9715]
May-10 16:50:55.244 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound shared memory communication to TCP port [port=48100, locHost=0.0.0.0/0.0.0.0]
May-10 16:50:55.252 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound to TCP port [port=47100, locHost=0.0.0.0/0.0.0.0]
May-10 16:50:55.262 [main] WARN o.a.i.s.c.noop.NoopCheckpointSpi - Checkpoints are disabled (to enable configure any GridCheckpointSpi implementation)
May-10 16:50:55.274 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Registered SPI MBean: org.apache:clsLdr=55f96302,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi
May-10 16:50:55.274 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI started ok [startMs=0, spiMBean=org.apache:clsLdr=55f96302,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi]
May-10 16:50:55.276 [main] WARN o.a.i.s.s.noop.NoopSwapSpaceSpi - Swap space is disabled. To enable use FileSwapSpaceSpi.
May-10 16:50:55.276 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Security status [authentication=off, tls/ssl=off]
May-10 16:50:55.358 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully started [name=TCP binary, host=0.0.0.0/0.0.0.0, port=11211]
May-10 16:50:55.385 [main] INFO o.a.i.i.u.i.s.IpcSharedMemoryServerEndpoint - IPC shared memory server endpoint started [port=10500, tokDir=/tmp/ignite/ipc/shmem/96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e-9715]
May-10 16:50:55.386 [main] INFO o.a.i.i.u.i.l.IpcServerTcpEndpoint - IPC server loopback endpoint started [port=11400]
May-10 16:50:55.404 [main] INFO o.a.i.s.d.tcp.TcpDiscoverySpi - Successfully bound to TCP port [port=47500, localHost=0.0.0.0/0.0.0.0]
May-10 16:50:55.408 [main] WARN o.a.i.s.d.t.i.m.TcpDiscoveryMulticastIpFinder - TcpDiscoveryMulticastIpFinder has no pre-configured addresses (it is recommended in production to specify at least one address in TcpDiscoveryMulticastIpFinder.getAddresses() configuration property)
May-10 16:51:01.669 [main] WARN o.a.i.s.d.tcp.TcpDiscoverySpi - Node has not been connected to topology and will repeat join process. Check remote nodes logs for possible error messages. Note that large topology may require significant time to start. Increase 'TcpDiscoverySpi.networkTimeout' configuration property if getting this message on the starting nodes [networkTimeout=5000]
May-10 16:51:06.821 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FINISHED
May-10 16:51:06.822 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FAILED
May-10 16:51:06.822 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: JOB_MAPPED
May-10 16:51:06.923 [main] WARN o.a.i.i.p.c.GridCacheEvictionManager - <igfs-data> Evictions are not synchronized with other nodes in topology which provides 2x-3x better performance but may cause data inconsistency if cache store is not configured (consider changing 'evictSynchronized' configuration property).
May-10 16:51:06.959 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-data, mode=PARTITIONED]
May-10 16:51:06.965 [main] WARN o.a.i.i.p.cache.GridCacheProcessor - Eviction policy not enabled with ONHEAP_TIERED mode for cache (entries will not be moved to off-heap store): allSessions
May-10 16:51:07.024 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=allSessions, mode=PARTITIONED]
May-10 16:51:07.028 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-sys-cache, mode=REPLICATED]
May-10 16:51:07.031 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-atomics-sys-cache, mode=PARTITIONED]
May-10 16:51:07.036 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-meta, mode=REPLICATED]
May-10 16:51:07.038 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-marshaller-sys-cache, mode=REPLICATED]
May-10 16:51:07.433 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=ignite-sys-cache, waitList=[]]
May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=ignite-marshaller-sys-cache, waitList=[]]
May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=ignite-atomics-sys-cache, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache]]
May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=igfs-data, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache, ignite-atomics-sys-cache]]
May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=allSessions, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache, ignite-atomics-sys-cache]]
May-10 16:51:07.435 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=igfs-meta, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache, ignite-atomics-sys-cache]]
May-10 16:51:07.438 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Rebalancing required[top=AffinityTopologyVersion [topVer=2, minorTopVer=0], evt=NODE_JOINED, node=96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e]
May-10 16:51:07.439 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-marshaller-sys-cache> Starting rebalancing [cache=ignite-marshaller-sys-cache, mode=SYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=20, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1]
May-10 16:51:07.443 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-sys-cache> Starting rebalancing [cache=ignite-sys-cache, mode=SYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=100, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1]
May-10 16:51:07.458 [marshaller-cache-#72%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-marshaller-sys-cache> Completed (final) rebalancing [cache=ignite-marshaller-sys-cache, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=20 ms]
May-10 16:51:07.463 [marshaller-cache-#72%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-sys-cache> Completed (final) rebalancing [cache=ignite-sys-cache, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=20 ms]
May-10 16:51:07.464 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-atomics-sys-cache> Starting rebalancing [cache=ignite-atomics-sys-cache, mode=SYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=490, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1]
May-10 16:51:07.484 [sys-#28%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-atomics-sys-cache> Completed (final) rebalancing [cache=ignite-atomics-sys-cache, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=20 ms]
May-10 16:51:07.485 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-data> Starting rebalancing [cache=igfs-data, mode=ASYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=490, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1]
May-10 16:51:07.486 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <allSessions> Starting rebalancing [cache=allSessions, mode=ASYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=490, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1]
May-10 16:51:07.487 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-meta> Starting rebalancing [cache=igfs-meta, mode=ASYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=512, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1]
May-10 16:51:07.529 [sys-#29%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-data> Completed (final) rebalancing [cache=igfs-data, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=40 ms]
May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Performance suggestions for grid 'nextflow' (fix if possible)
May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To disable, set -DIGNITE_PERFORMANCE_SUGGESTIONS_DISABLED=true
May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - ^-- Disable collision resolution (remove 'collisionSpi' from configuration)
May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To start Console Management & Monitoring run ignitevisorcmd.{sh|bat}
May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
May-10 16:51:07.541 [sys-#30%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <allSessions> Completed (final) rebalancing [cache=allSessions, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=50 ms]
May-10 16:51:07.541 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
>>> +----------------------------------------------------------------------------+
>>> Ignite ver. 1.5.0-final#20151229-sha1:f1f8cda2f3f62231f42a59951bf34c39577c1bec
>>> +----------------------------------------------------------------------------+
>>> OS name: Linux 4.2.0-30-generic amd64
>>> CPU(s): 12
>>> Heap: 7.0GB
>>> VM name: 9715@ppgserver
>>> Grid name: nextflow
>>> Local node [ID=96C7D4B0-DC9B-4A9D-9A50-1B87BD4C512E, order=2, clientMode=false]
>>> Local node addresses: [172.17.0.1/0:0:0:0:0:0:0:1%lo, 134.7.57.219/127.0.0.1, /134.7.57.219, /172.17.0.1]
>>> Local ports: TCP:10500 TCP:11211 TCP:11400 TCP:47100 UDP:47400 TCP:47500 TCP:48100
May-10 16:51:07.543 [main] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=2, servers=2, clients=0, CPUs=24, heap=10.0GB]
May-10 16:51:07.549 [sys-#30%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-meta> Completed (final) rebalancing [cache=igfs-meta, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=60 ms]
May-10 16:51:07.623 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> slots: 24
May-10 16:51:07.625 [Topology watcher] DEBUG n.processor.TaskPollingMonitor - Monitor current capacity: 34 (after inc: 34)
May-10 16:51:07.631 [main] DEBUG nextflow.util.RemoteSession - Packed library (32 files) at path: /tmp/nxf-4216427704367695635
May-10 16:51:07.748 [main] DEBUG nextflow.executor.IgConnector - Cluster shutdownOnComplete: false
May-10 16:51:07.801 [main] DEBUG nextflow.Session - >>> barrier register (process: buildIndex)
May-10 16:51:07.824 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > buildIndex -- maxForks: 12
May-10 16:51:07.844 [main] DEBUG nextflow.Channel - files for syntax: glob; folder: data/; pattern: *.txt.gz; options: null
May-10 16:51:07.900 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite
May-10 16:51:07.900 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite'
May-10 16:51:07.901 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor
May-10 16:51:07.901 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite
May-10 16:51:07.902 [main] DEBUG nextflow.Session - >>> barrier register (process: trimming)
May-10 16:51:07.910 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > trimming -- maxForks: 12
May-10 16:51:07.931 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [62/4b1a93] Cached process > buildIndex (1)
May-10 16:51:07.948 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <buildIndex> Sending poison pills and terminating process
May-10 16:51:07.950 [Actor Thread 2] DEBUG nextflow.Session - <<< barrier arrive (process: buildIndex)
May-10 16:51:07.951 [Actor Thread 3] DEBUG n.processor.ParallelTaskProcessor - <buildIndex> After stop
May-10 16:51:07.958 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite
May-10 16:51:07.958 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite'
May-10 16:51:07.958 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor
May-10 16:51:07.958 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite
May-10 16:51:07.959 [main] DEBUG nextflow.Session - >>> barrier register (process: mapping)
May-10 16:51:07.970 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > mapping -- maxForks: 12
May-10 16:51:07.974 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite
May-10 16:51:07.974 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite'
May-10 16:51:07.974 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor
May-10 16:51:07.974 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite
May-10 16:51:07.974 [main] DEBUG nextflow.Session - >>> barrier register (process: mergeBams1)
May-10 16:51:07.981 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > mergeBams1 -- maxForks: 12
May-10 16:51:07.987 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite
May-10 16:51:07.987 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite'
May-10 16:51:07.987 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor
May-10 16:51:07.988 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite
May-10 16:51:07.988 [main] DEBUG nextflow.Session - >>> barrier register (process: markDuplicates)
May-10 16:51:08.237 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > markDuplicates -- maxForks: 12
May-10 16:51:08.244 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite
May-10 16:51:08.244 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite'
May-10 16:51:08.244 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor
May-10 16:51:08.244 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite
May-10 16:51:08.245 [main] DEBUG nextflow.Session - >>> barrier register (process: mergeBams)
May-10 16:51:08.255 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > mergeBams -- maxForks: 12
May-10 16:51:08.258 [main] DEBUG nextflow.script.ScriptRunner - > Await termination
May-10 16:51:08.258 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [56/90ee4f] Cached process > trimming (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.258 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [f7/ed1c59] Cached process > trimming (Ortan_066.P1_TAGCTT.001)
May-10 16:51:08.258 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [2b/c81105] Cached process > trimming (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.258 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [94/e1c848] Cached process > trimming (Bari3_072C.P1_CGATGT.001)
May-10 16:51:08.259 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [71/00c2f6] Cached process > trimming (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.259 [main] DEBUG nextflow.Session - Session await
May-10 16:51:08.259 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [a8/189438] Cached process > trimming (Bari3_106D.P1_TGACCA.004)
May-10 16:51:08.259 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [75/37c7a0] Cached process > trimming (Gunas_062.P3_ACAGTG.001)
May-10 16:51:08.259 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [4d/128a5d] Cached process > trimming (Bari3_100.P3_TTAGGC.005)
May-10 16:51:08.259 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [9a/835a8b] Cached process > trimming (Deste_080.P3_TGACCA.003)
May-10 16:51:08.258 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [61/fba5a8] Cached process > trimming (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.259 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [b2/72a6ef] Cached process > trimming (Bari3_072C.P1_CGATGT.002)
May-10 16:51:08.259 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [82/2d987e] Cached process > trimming (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.263 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/7b3e83d405eaf6953c9bcdc9219cfd/output_reverse_paired.fq
May-10 16:51:08.263 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f5/ee6240a047c3d00f6f0b6c0f32b799/output_forward_paired.fq
May-10 16:51:08.268 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f5/ee6240a047c3d00f6f0b6c0f32b799/output_forward_paired.fq
May-10 16:51:08.268 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/7b3e83d405eaf6953c9bcdc9219cfd/output_reverse_paired.fq
May-10 16:51:08.268 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [36/4af931] Cached process > trimming (Ortan_066.P1_TAGCTT.002)
May-10 16:51:08.268 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/09/655b2ea4e32580e9adf84859fae52d/output_forward_paired.fq
May-10 16:51:08.268 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d7/4387bb552542bf509617ae591d706d/output_reverse_paired.fq
May-10 16:51:08.269 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/09/655b2ea4e32580e9adf84859fae52d/output_forward_paired.fq
May-10 16:51:08.269 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d7/4387bb552542bf509617ae591d706d/output_reverse_paired.fq
May-10 16:51:08.270 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1a/38538ba7fe9707c79c406c254ef2a4/output_reverse_paired.fq
May-10 16:51:08.270 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [b2/d473ec] Cached process > trimming (Gunas_062.P3_ACAGTG.002)
May-10 16:51:08.271 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1a/38538ba7fe9707c79c406c254ef2a4/output_reverse_paired.fq
May-10 16:51:08.271 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a4/a30e868e44eb7ec0bb04a924476565/output_reverse_paired.fq
May-10 16:51:08.272 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a4/a30e868e44eb7ec0bb04a924476565/output_reverse_paired.fq
May-10 16:51:08.273 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8e/9fae5bd8b385f0bd62615b306231f6/output_reverse_paired.fq
May-10 16:51:08.273 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8e/9fae5bd8b385f0bd62615b306231f6/output_reverse_paired.fq
May-10 16:51:08.274 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/17/13a0639d5c1c551f8eb28c1a027a90/output_reverse_paired.fq
May-10 16:51:08.274 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/17/13a0639d5c1c551f8eb28c1a027a90/output_reverse_paired.fq
May-10 16:51:08.278 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [2a/70d6da] Cached process > trimming (Bari3_100.P3_TTAGGC.002)
May-10 16:51:08.278 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [2f/c20c23] Cached process > trimming (Cermi_075.P1_TTAGGC.005)
May-10 16:51:08.278 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [e7/0fbb61] Cached process > trimming (Deste_080.P3_TGACCA.004)
May-10 16:51:08.280 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c7/f63677158222ad0e06a21103ce6ce7/output_reverse_paired.fq
May-10 16:51:08.280 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ef/ccfd34505ff3248d0ff03905c3ba7d/output_forward_paired.fq
May-10 16:51:08.281 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ef/ccfd34505ff3248d0ff03905c3ba7d/output_forward_paired.fq
May-10 16:51:08.281 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c7/f63677158222ad0e06a21103ce6ce7/output_reverse_paired.fq
May-10 16:51:08.281 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [80/86853f] Cached process > mapping (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.281 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/40/bba413fb950a4f520ce0da90feccea/output_forward_paired.fq
May-10 16:51:08.281 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/05/7c3f7dda3af99223fad11dcaeed056/output_reverse_paired.fq
May-10 16:51:08.282 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/05/7c3f7dda3af99223fad11dcaeed056/output_reverse_paired.fq
May-10 16:51:08.282 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/40/bba413fb950a4f520ce0da90feccea/output_forward_paired.fq
May-10 16:51:08.283 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c3/5158c038ad9f626e3d82f45b330c6d/output_forward_paired.fq
May-10 16:51:08.283 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c3/5158c038ad9f626e3d82f45b330c6d/output_forward_paired.fq
May-10 16:51:08.283 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/25/cecd0cdb277da301680b2502beea99/output_forward_paired.fq
May-10 16:51:08.283 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/25/cecd0cdb277da301680b2502beea99/output_forward_paired.fq
May-10 16:51:08.284 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [3d/d3b60f] Cached process > trimming (Bari3_072C.P1_CGATGT.005)
May-10 16:51:08.284 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6f/d409b20a641673ccaa64e05453290c/output_forward_paired.fq
May-10 16:51:08.284 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6f/d409b20a641673ccaa64e05453290c/output_forward_paired.fq
May-10 16:51:08.285 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [e8/c28e22] Cached process > trimming (Bari3_106D.P1_TGACCA.003)
May-10 16:51:08.286 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [74/32e7fb] Cached process > mapping (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.289 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [e4/1e8b37] Cached process > mapping (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.289 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [99/e238f3] Cached process > mapping (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.289 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [ab/a6a4ca] Cached process > mapping (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.289 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/18/6c6cd3bd333626f4df456fd89dde88/output_forward_paired.fq
May-10 16:51:08.289 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/18/6c6cd3bd333626f4df456fd89dde88/output_forward_paired.fq
May-10 16:51:08.290 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3e/11e547e48457fc6f526895d879b87c/output_reverse_paired.fq
May-10 16:51:08.290 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [de/85bb3b] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.291 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [67/75dcf3] Cached process > mapping (Bari3_072C.P6_CGATGT.001)
May-10 16:51:08.291 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3a/10d519181a2f52d8a9ac400a06a71d/output_forward_paired.fq
May-10 16:51:08.291 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3a/10d519181a2f52d8a9ac400a06a71d/output_forward_paired.fq
May-10 16:51:08.292 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f0/321d8b311552a38ef06d2a895c8c60/output_forward_paired.fq
May-10 16:51:08.292 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [51/2b16cb] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.292 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f0/321d8b311552a38ef06d2a895c8c60/output_forward_paired.fq
May-10 16:51:08.293 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/27ae3fbb70af1040f95fde64f571b9/output_forward_paired.fq
May-10 16:51:08.293 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/27ae3fbb70af1040f95fde64f571b9/output_forward_paired.fq
May-10 16:51:08.293 [Actor Thread 26] INFO nextflow.processor.TaskProcessor - [04/02d207] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.293 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/bb/2978e0e2395205e92268b8308ab6d8/output_forward_paired.fq
May-10 16:51:08.294 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/bb/2978e0e2395205e92268b8308ab6d8/output_forward_paired.fq
May-10 16:51:08.294 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/0bc7b4067e916eb9e058643f222d36/output_forward_paired.fq
May-10 16:51:08.294 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/0bc7b4067e916eb9e058643f222d36/output_forward_paired.fq
May-10 16:51:08.294 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [8e/bb21aa] Cached process > trimming (Gunas_062.P3_ACAGTG.005)
May-10 16:51:08.297 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [0e/061b08] Cached process > trimming (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.297 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [5b/cadf96] Cached process > trimming (Cermi_075.P1_TTAGGC.001)
May-10 16:51:08.299 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [78/1ca549] Cached process > trimming (Cermi_075.P1_TTAGGC.002)
May-10 16:51:08.299 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [7a/32ce6f] Cached process > trimming (Ortan_066.P1_TAGCTT.005)
May-10 16:51:08.300 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3e/11e547e48457fc6f526895d879b87c/output_reverse_paired.fq
May-10 16:51:08.300 [Actor Thread 19] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d3/9d3a08a32545c910d8d0eda150e454/output_forward_paired.fq
May-10 16:51:08.300 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d8/25acedd2919f763f06fa40720db150/output_reverse_paired.fq
May-10 16:51:08.300 [Actor Thread 19] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d3/9d3a08a32545c910d8d0eda150e454/output_forward_paired.fq
May-10 16:51:08.301 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d8/25acedd2919f763f06fa40720db150/output_reverse_paired.fq
May-10 16:51:08.301 [Actor Thread 19] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9c/f54d926648f67f7856c125387b02de/output_forward_paired.fq
May-10 16:51:08.301 [Actor Thread 25] INFO nextflow.processor.TaskProcessor - [d5/8b9fc9] Cached process > trimming (Bari3_100.P3_TTAGGC.001)
May-10 16:51:08.301 [Actor Thread 19] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9c/f54d926648f67f7856c125387b02de/output_forward_paired.fq
May-10 16:51:08.302 [Actor Thread 19] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/f1e78a60c62a9cda1ec317a9235626/output_forward_paired.fq
May-10 16:51:08.302 [Actor Thread 19] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/f1e78a60c62a9cda1ec317a9235626/output_forward_paired.fq
May-10 16:51:08.303 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [a6/e1ec6a] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.303 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [c0/e7e02f] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.304 [Actor Thread 15] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/5e/e04eeb58ec4d50ce3aaea399cd823a/output_forward_paired.fq
May-10 16:51:08.304 [Actor Thread 15] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/5e/e04eeb58ec4d50ce3aaea399cd823a/output_forward_paired.fq
May-10 16:51:08.304 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [ec/d191b5] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.304 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [f4/277a19] Cached process > trimming (Ortan_066.P1_TAGCTT.003)
May-10 16:51:08.304 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [9d/207001] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.305 [Actor Thread 15] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/74cbb04aa07f47522f29089ed5c41c/output_forward_paired.fq
May-10 16:51:08.305 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [c0/259274] Cached process > trimming (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.305 [Actor Thread 15] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/74cbb04aa07f47522f29089ed5c41c/output_forward_paired.fq
May-10 16:51:08.306 [Actor Thread 15] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/526e3f2196ceb3e5a05268222da9d7/output_forward_paired.fq
May-10 16:51:08.306 [Actor Thread 15] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/526e3f2196ceb3e5a05268222da9d7/output_forward_paired.fq
May-10 16:51:08.307 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [5e/e7d977] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.308 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/aa/05b5963d1f4ff96f7f49bdd803ba83/output_forward_paired.fq
May-10 16:51:08.308 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [cf/2aae9e] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.309 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [63/78b39c] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.309 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [60/fb9b9f] Cached process > trimming (Gunas_062.P3_ACAGTG.003)
May-10 16:51:08.310 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [36/209bd1] Cached process > mapping (Bari3_072C.P1_CGATGT.002)
May-10 16:51:08.310 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/aa/05b5963d1f4ff96f7f49bdd803ba83/output_forward_paired.fq
May-10 16:51:08.311 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [cd/5e47bd] Cached process > trimming (Bari2_072n2.P7_CGATGT.002)
May-10 16:51:08.311 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/64/c674bc4c9766343d0800445d72f62d/output_reverse_paired.fq
May-10 16:51:08.311 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0b/e037d7c15d93bc32bcccedb3bbb471/output_forward_paired.fq
May-10 16:51:08.312 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0b/e037d7c15d93bc32bcccedb3bbb471/output_forward_paired.fq
May-10 16:51:08.312 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4f/f4b3f47005abac3ac561db13bbfe89/output_forward_paired.fq
May-10 16:51:08.312 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [54/ee080d] Cached process > mapping (Bari3_072C.P1_CGATGT.002)
May-10 16:51:08.313 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4f/f4b3f47005abac3ac561db13bbfe89/output_forward_paired.fq
May-10 16:51:08.313 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/9233e6e485a40ebb4d8bdb87d5057a/output_forward_paired.fq
May-10 16:51:08.313 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/9233e6e485a40ebb4d8bdb87d5057a/output_forward_paired.fq
May-10 16:51:08.314 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/64/c674bc4c9766343d0800445d72f62d/output_reverse_paired.fq
May-10 16:51:08.314 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [a9/7bd0f0] Cached process > trimming (Bari2_072n2.P7_CGATGT.001)
May-10 16:51:08.314 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [e8/dc8de8] Cached process > trimming (Cermi_075.P1_TTAGGC.004)
May-10 16:51:08.314 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [a5/1b0aa4] Cached process > trimming (Bari3_072C.P1_CGATGT.003)
May-10 16:51:08.314 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/fb/4f352b8c4354f2a01dce3015669c9e/output_reverse_paired.fq
May-10 16:51:08.315 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/fb/4f352b8c4354f2a01dce3015669c9e/output_reverse_paired.fq
May-10 16:51:08.315 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/dd4a7d34256209c3e02bac7db12ca9/output_reverse_paired.fq
May-10 16:51:08.316 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/dd4a7d34256209c3e02bac7db12ca9/output_reverse_paired.fq
May-10 16:51:08.316 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f1/654bad1283b5dcda16ea1334362710/output_reverse_paired.fq
May-10 16:51:08.317 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [74/99bb18] Cached process > trimming (Deste_080.P3_TGACCA.002)
May-10 16:51:08.317 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f1/654bad1283b5dcda16ea1334362710/output_reverse_paired.fq
May-10 16:51:08.317 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6c/3bc61257c3b82859cae61f461288b1/output_forward_paired.fq
May-10 16:51:08.318 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6c/3bc61257c3b82859cae61f461288b1/output_forward_paired.fq
May-10 16:51:08.318 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/13/c85ead3b14f1c253b611cfb4c653a8/output_reverse_paired.fq
May-10 16:51:08.318 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/59/4917137a7f08b003017ad1b1903ead/output_forward_paired.fq
May-10 16:51:08.318 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/13/c85ead3b14f1c253b611cfb4c653a8/output_reverse_paired.fq
May-10 16:51:08.319 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/59/4917137a7f08b003017ad1b1903ead/output_forward_paired.fq
May-10 16:51:08.319 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b2/458a7843ca38decc61470d58e5b9ee/output_reverse_paired.fq
May-10 16:51:08.319 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/92/f345a2946c2bc8219c3a836929b4ab/output_forward_paired.fq
May-10 16:51:08.319 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b2/458a7843ca38decc61470d58e5b9ee/output_reverse_paired.fq
May-10 16:51:08.320 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d90ee8082bf38987217def6ddfffa1/output_reverse_paired.fq
May-10 16:51:08.320 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/92/f345a2946c2bc8219c3a836929b4ab/output_forward_paired.fq
May-10 16:51:08.320 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [0b/508452] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.321 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d90ee8082bf38987217def6ddfffa1/output_reverse_paired.fq
May-10 16:51:08.321 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [0d/097c44] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.322 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [1c/33272f] Cached process > trimming (Deste_080.P3_TGACCA.001)
May-10 16:51:08.322 [Actor Thread 25] INFO nextflow.processor.TaskProcessor - [97/e9e273] Cached process > trimming (Ortan_066.P1_TAGCTT.004)
May-10 16:51:08.323 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [de/dd1ff1] Cached process > trimming (Bari3_100.P5_TTAGGC.001)
May-10 16:51:08.323 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/48d93c54bce79c112b2ecb7e3002f8/output_forward_paired.fq
May-10 16:51:08.324 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [ec/1e3dd3] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.324 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [9a/bae5a4] Cached process > trimming (CDCLeader.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.326 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [e4/d0fdaa] Cached process > trimming (Cermi_075.P1_TTAGGC.003)
May-10 16:51:08.327 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [e6/b7fa8c] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.328 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [60/a2b4d2] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.328 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [a6/9aa798] Cached process > trimming (Bari3_106D.P1_TGACCA.005)
May-10 16:51:08.328 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [51/8cfdd3] Cached process > mapping (Deste_080.P3_TGACCA.003)
May-10 16:51:08.329 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [ec/945a48] Cached process > mapping (Bari3_100.P3_TTAGGC.005)
May-10 16:51:08.330 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [2d/cf28e6] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.331 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [e4/ac64e0] Cached process > trimming (Bari3_100.P3_TTAGGC.004)
May-10 16:51:08.332 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/35/8ddd166c27008f41f8a7ebddd4c046/output_reverse_paired.fq
May-10 16:51:08.332 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [9c/fb045c] Cached process > mapping (Deste_080.P3_TGACCA.003)
May-10 16:51:08.332 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/48d93c54bce79c112b2ecb7e3002f8/output_forward_paired.fq
May-10 16:51:08.332 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [57/aab632] Cached process > trimming (Bari3_106D.P4_TGACCA.001)
May-10 16:51:08.333 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [2f/eeca45] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.333 [Actor Thread 32] INFO nextflow.processor.TaskProcessor - [0a/7585e7] Cached process > mapping (Bari2_072n2.P7_CGATGT.003)
May-10 16:51:08.334 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [14/b3a300] Cached process > mapping (Deste_080.P3_TGACCA.003)
May-10 16:51:08.335 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [06/b88cd8] Cached process > trimming (Bari3_100.P3_TTAGGC.003)
May-10 16:51:08.336 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [a3/279b6c] Cached process > trimming (Bari3_106D.P1_TGACCA.002)
May-10 16:51:08.336 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/35/8ddd166c27008f41f8a7ebddd4c046/output_reverse_paired.fq
May-10 16:51:08.336 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/63/e4a40f11a1e8f08b7397ada2f92e05/output_forward_paired.fq
May-10 16:51:08.337 [Actor Thread 5] DEBUG n.processor.ParallelTaskProcessor - <trimming> Poison pill arrived
May-10 16:51:08.340 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [87/43a714] Cached process > mapping (Gunas_062.P3_ACAGTG.001)
May-10 16:51:08.340 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [ed/3ed35f] Cached process > trimming (Deste_080.P3_TGACCA.005)
May-10 16:51:08.340 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [a5/ca99ec] Cached process > trimming (Bari3_106D.P1_TGACCA.001)
May-10 16:51:08.340 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [cf/d340a0] Cached process > trimming (Gunas_062.P3_ACAGTG.004)
May-10 16:51:08.340 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [91/f25d68] Cached process > mapping (Bari3_100.P3_TTAGGC.005)
May-10 16:51:08.341 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [5b/d8a920] Cached process > mapping (Gunas_062.P3_ACAGTG.001)
May-10 16:51:08.342 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/63/e4a40f11a1e8f08b7397ada2f92e05/output_forward_paired.fq
May-10 16:51:08.344 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4e/bc7cb243a1ddd54b8a1a72bdfedac8/output_reverse_paired.fq
May-10 16:51:08.344 [Actor Thread 2] DEBUG nextflow.processor.StateObj - <trimming> State before poison: StateObj[submitted: 47; completed: 38; poisoned: false; allScalar: false]
May-10 16:51:08.345 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [ce/35af6a] Cached process > mapping (Gunas_062.P3_ACAGTG.001)
May-10 16:51:08.345 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [4a/780fcf] Cached process > trimming (Bari3_072C.P1_CGATGT.004)
May-10 16:51:08.345 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/85/02c73702e4330bc165422ec345dd80/output_forward_paired.fq
May-10 16:51:08.345 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4e/bc7cb243a1ddd54b8a1a72bdfedac8/output_reverse_paired.fq
May-10 16:51:08.346 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c1/5ddca99def174eb364f9f0cb68870b/output_reverse_paired.fq
May-10 16:51:08.346 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [fd/96251f] Cached process > mapping (Bari3_106D.P1_TGACCA.004)
May-10 16:51:08.346 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/85/02c73702e4330bc165422ec345dd80/output_forward_paired.fq
May-10 16:51:08.346 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [f4/a8119e] Cached process > mapping (Bari3_106D.P1_TGACCA.004)
May-10 16:51:08.346 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c1/5ddca99def174eb364f9f0cb68870b/output_reverse_paired.fq
May-10 16:51:08.346 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/e7/275451bed8466bb01a7818b148decd/output_forward_paired.fq
May-10 16:51:08.346 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1e/bf11c90294fcc2ea9a278b38d7b711/output_reverse_paired.fq
May-10 16:51:08.347 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/e7/275451bed8466bb01a7818b148decd/output_forward_paired.fq
May-10 16:51:08.347 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1e/bf11c90294fcc2ea9a278b38d7b711/output_reverse_paired.fq
May-10 16:51:08.347 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/707303e7b51081bf6495a2a76646c5/output_forward_paired.fq
May-10 16:51:08.347 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/83/36ad54c5215dfde16b49494fb3680e/output_reverse_paired.fq
May-10 16:51:08.347 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [9d/29a3f7] Cached process > mapping (Gunas_062.P3_ACAGTG.001)
May-10 16:51:08.347 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [f7/6f46e3] Cached process > mapping (Deste_080.P3_TGACCA.004)
May-10 16:51:08.348 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/707303e7b51081bf6495a2a76646c5/output_forward_paired.fq
May-10 16:51:08.348 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/83/36ad54c5215dfde16b49494fb3680e/output_reverse_paired.fq
May-10 16:51:08.348 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d6/aa4388e861f5b31b256d3f01757544/output_forward_paired.fq
May-10 16:51:08.348 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/21/1de1ccf19f87fe0309ba6b951ac40e/output_reverse_paired.fq
May-10 16:51:08.348 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d6/aa4388e861f5b31b256d3f01757544/output_forward_paired.fq
May-10 16:51:08.349 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/21/1de1ccf19f87fe0309ba6b951ac40e/output_reverse_paired.fq
May-10 16:51:08.349 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ff/0ace710bfe55474cf6f5df51c46ebe/output_forward_paired.fq
May-10 16:51:08.349 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7c/c148a1fcbaaa4b4041c968e6772c73/output_reverse_paired.fq
May-10 16:51:08.349 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ff/0ace710bfe55474cf6f5df51c46ebe/output_forward_paired.fq
May-10 16:51:08.349 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7c/c148a1fcbaaa4b4041c968e6772c73/output_reverse_paired.fq
May-10 16:51:08.349 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c0/11b47c91615759b7b92ee3d125cb36/output_forward_paired.fq
May-10 16:51:08.350 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/d5fd2c712eeb3035bea84b4f817680/output_reverse_paired.fq
May-10 16:51:08.350 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c0/11b47c91615759b7b92ee3d125cb36/output_forward_paired.fq
May-10 16:51:08.350 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/d5fd2c712eeb3035bea84b4f817680/output_reverse_paired.fq
May-10 16:51:08.350 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ea/481dcd903d6217163899602a70ecb2/output_forward_paired.fq
May-10 16:51:08.350 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/42/28056a7d8bb6ef5f4447364d13d39b/output_reverse_paired.fq
May-10 16:51:08.351 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ea/481dcd903d6217163899602a70ecb2/output_forward_paired.fq
May-10 16:51:08.351 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/42/28056a7d8bb6ef5f4447364d13d39b/output_reverse_paired.fq
May-10 16:51:08.351 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/8b0ee8069a29cd5707fa9f2b539fcf/output_forward_paired.fq
May-10 16:51:08.351 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c8/a995254f01f10b0566da7413c51077/output_reverse_paired.fq
May-10 16:51:08.351 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/8b0ee8069a29cd5707fa9f2b539fcf/output_forward_paired.fq
May-10 16:51:08.351 [Actor Thread 32] INFO nextflow.processor.TaskProcessor - [b3/46923e] Cached process > mapping (Deste_080.P3_TGACCA.004)
May-10 16:51:08.352 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c8/a995254f01f10b0566da7413c51077/output_reverse_paired.fq
May-10 16:51:08.352 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/42d5df37bc07d58a492a752f9696a8/output_forward_paired.fq
May-10 16:51:08.352 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [fd/bf4563] Cached process > mapping (Deste_080.P3_TGACCA.004)
May-10 16:51:08.352 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [05/5f206f] Cached process > mapping (Deste_080.P3_TGACCA.004)
May-10 16:51:08.352 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ab/38f3d137d8dd1a599b2d9dd923d191/output_reverse_paired.fq
May-10 16:51:08.352 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [f2/dca3d6] Cached process > mapping (Bari3_106D.P1_TGACCA.004)
May-10 16:51:08.352 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/42d5df37bc07d58a492a752f9696a8/output_forward_paired.fq
May-10 16:51:08.352 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ab/38f3d137d8dd1a599b2d9dd923d191/output_reverse_paired.fq
May-10 16:51:08.352 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2c/78ba6b4c2bbb678c19cb2421c16faa/output_forward_paired.fq
May-10 16:51:08.353 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d6759043401cf02e6f741f50b25419/output_reverse_paired.fq
May-10 16:51:08.353 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2c/78ba6b4c2bbb678c19cb2421c16faa/output_forward_paired.fq
May-10 16:51:08.353 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d6759043401cf02e6f741f50b25419/output_reverse_paired.fq
May-10 16:51:08.353 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/cc/68f8eb07337dc4254175f076863476/output_forward_paired.fq
May-10 16:51:08.353 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/cc/68f8eb07337dc4254175f076863476/output_forward_paired.fq
May-10 16:51:08.353 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ae/f447efcd2388a69aaa23a024b3ba60/output_reverse_paired.fq
May-10 16:51:08.354 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/35c61dfcf05f6c23b929867ceb81ec/output_forward_paired.fq
May-10 16:51:08.354 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ae/f447efcd2388a69aaa23a024b3ba60/output_reverse_paired.fq
May-10 16:51:08.354 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/35c61dfcf05f6c23b929867ceb81ec/output_forward_paired.fq
May-10 16:51:08.354 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8a/35084818a03b2f7bcd36325b3cc988/output_reverse_paired.fq
May-10 16:51:08.354 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/55/ea88c448d386be2727efbd1fc70bdf/output_forward_paired.fq
May-10 16:51:08.355 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8a/35084818a03b2f7bcd36325b3cc988/output_reverse_paired.fq
May-10 16:51:08.355 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/55/ea88c448d386be2727efbd1fc70bdf/output_forward_paired.fq
May-10 16:51:08.355 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/b728cfcd97a9e28edce545c7db06fc/output_reverse_paired.fq
May-10 16:51:08.355 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0d/e74e13f45613d14ddb8a97513445d4/output_forward_paired.fq
May-10 16:51:08.355 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/b728cfcd97a9e28edce545c7db06fc/output_reverse_paired.fq
May-10 16:51:08.355 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0d/e74e13f45613d14ddb8a97513445d4/output_forward_paired.fq
May-10 16:51:08.356 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/06/8e85ad7a1221f66e862ac5ae51f1ec/output_forward_paired.fq
May-10 16:51:08.356 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7a/471ed1154b2ff05229e1d0b7ea3be9/output_reverse_paired.fq
May-10 16:51:08.356 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/06/8e85ad7a1221f66e862ac5ae51f1ec/output_forward_paired.fq
May-10 16:51:08.356 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7a/471ed1154b2ff05229e1d0b7ea3be9/output_reverse_paired.fq
May-10 16:51:08.356 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [bf/021fe6] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.356 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b3/eb3a9e24ca075b2bdff4c907dd5a2d/output_forward_paired.fq
May-10 16:51:08.356 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/69/599ff2d771ba08de700b57d97475b8/output_reverse_paired.fq
May-10 16:51:08.356 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b3/eb3a9e24ca075b2bdff4c907dd5a2d/output_forward_paired.fq
May-10 16:51:08.357 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/69/599ff2d771ba08de700b57d97475b8/output_reverse_paired.fq
May-10 16:51:08.357 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3d/bf0441ff993f6ab18736f3bf60b44d/output_forward_paired.fq
May-10 16:51:08.357 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3d/bf0441ff993f6ab18736f3bf60b44d/output_forward_paired.fq
May-10 16:51:08.357 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/eb/bef9263a6db253ab11cda07555a767/output_reverse_paired.fq
May-10 16:51:08.357 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/e55a7a4d1b90df1cf21101009d5e3c/output_forward_paired.fq
May-10 16:51:08.358 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/eb/bef9263a6db253ab11cda07555a767/output_reverse_paired.fq
May-10 16:51:08.358 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/e55a7a4d1b90df1cf21101009d5e3c/output_forward_paired.fq
May-10 16:51:08.358 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/78/dbea2c5e232183a3edef679c586f04/output_reverse_paired.fq
May-10 16:51:08.358 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/78/dbea2c5e232183a3edef679c586f04/output_reverse_paired.fq
May-10 16:51:08.359 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/4698fbd129c79b6f65541adb2eef1b/output_reverse_paired.fq
May-10 16:51:08.359 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/4698fbd129c79b6f65541adb2eef1b/output_reverse_paired.fq
May-10 16:51:08.359 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9d/50966746c185d4f0b189bb136ab6c3/output_reverse_paired.fq
May-10 16:51:08.360 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9d/50966746c185d4f0b189bb136ab6c3/output_reverse_paired.fq
May-10 16:51:08.360 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [68/43bba3] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.360 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d5/87127f3395fc704dd5456a375f67e5/output_reverse_paired.fq
May-10 16:51:08.360 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d5/87127f3395fc704dd5456a375f67e5/output_reverse_paired.fq
May-10 16:51:08.361 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <trimming> Sending poison pills and terminating process
May-10 16:51:08.361 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/08/eeefdc5788250d5171abf27c83e86e/output_reverse_paired.fq
May-10 16:51:08.361 [Actor Thread 13] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/34ff3384d930020509fd48b83e5b4e/output_forward_paired.fq
May-10 16:51:08.361 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/08/eeefdc5788250d5171abf27c83e86e/output_reverse_paired.fq
May-10 16:51:08.361 [Actor Thread 2] DEBUG nextflow.Session - <<< barrier arrive (process: trimming)
May-10 16:51:08.361 [Actor Thread 13] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/34ff3384d930020509fd48b83e5b4e/output_forward_paired.fq
May-10 16:51:08.362 [Actor Thread 8] DEBUG n.processor.ParallelTaskProcessor - <trimming> After stop
May-10 16:51:08.362 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/49/2ee70c5a99927655ffe2de9091c0ce/output_reverse_paired.fq
May-10 16:51:08.363 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [6f/3b704f] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.363 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [16/ebce9e] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.363 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/49/2ee70c5a99927655ffe2de9091c0ce/output_reverse_paired.fq
May-10 16:51:08.364 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [02/d658cc] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.364 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [b7/1d5f81] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.366 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [bf/5f6dbc] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.366 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [d5/f581cd] Cached process > mapping (Bari3_072C.P1_CGATGT.001)
May-10 16:51:08.366 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [7a/310176] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.367 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [24/d50bfb] Cached process > mapping (Bari3_072C.P1_CGATGT.001)
May-10 16:51:08.367 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [18/af07bf] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.367 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b8/c19fdb3dd5ccbbac713c1c6ea0531c/output_reverse_paired.fq
May-10 16:51:08.368 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [31/58c1b4] Cached process > mapping (Bari3_072C.P1_CGATGT.001)
May-10 16:51:08.368 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [d4/44c727] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.368 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [24/86dbdd] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.369 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [95/52ea79] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.371 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b8/c19fdb3dd5ccbbac713c1c6ea0531c/output_reverse_paired.fq
May-10 16:51:08.371 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [9d/f1950d] Cached process > mapping (Ortan_066.P1_TAGCTT.001)
May-10 16:51:08.371 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [83/7ebc18] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.371 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [eb/6e6ed1] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001)
May-10 16:51:08.372 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/97/f42fa122516625d4e49b83c3e3a5d7/output_reverse_paired.fq
May-10 16:51:08.373 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/97/f42fa122516625d4e49b83c3e3a5d7/output_reverse_paired.fq
May-10 16:51:08.373 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/43/8c92c22362b0aa7a87705bfdf83c13/output_reverse_paired.fq
May-10 16:51:08.373 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/43/8c92c22362b0aa7a87705bfdf83c13/output_reverse_paired.fq
May-10 16:51:08.374 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/98/9212dd4e73cb7d2abe3112fe1f7898/output_reverse_paired.fq
May-10 16:51:08.374 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/98/9212dd4e73cb7d2abe3112fe1f7898/output_reverse_paired.fq
May-10 16:51:08.374 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/72de8e81f0685520c9d108b2b4ef84/output_reverse_paired.fq
May-10 16:51:08.374 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [f1/550960] Cached process > mapping (Ortan_066.P1_TAGCTT.001)
May-10 16:51:08.374 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/72de8e81f0685520c9d108b2b4ef84/output_reverse_paired.fq
May-10 16:51:08.374 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a0/1609ddfb474e008ed6eff2bf63a60e/output_reverse_paired.fq
May-10 16:51:08.375 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a0/1609ddfb474e008ed6eff2bf63a60e/output_reverse_paired.fq
May-10 16:51:08.375 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [9c/437879] Cached process > mapping (Bari3_106D.P1_TGACCA.003)
May-10 16:51:08.375 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [3c/83d446] Cached process > mapping (Bari3_106D.P1_TGACCA.003)
May-10 16:51:08.378 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [12/e9dd84] Cached process > mapping (Bari3_072C.P1_CGATGT.005)
May-10 16:51:08.380 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [bf/15ff45] Cached process > mapping (Bari3_106D.P1_TGACCA.003)
May-10 16:51:08.382 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [bb/95076c] Cached process > mapping (Cermi_075.P1_TTAGGC.005)
May-10 16:51:08.382 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [3b/d3a41e] Cached process > mapping (Cermi_075.P1_TTAGGC.005)
May-10 16:51:08.379 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [76/e31653] Cached process > mapping (Bari3_072C.P1_CGATGT.005)
May-10 16:51:08.382 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [4c/6247d3] Cached process > mapping (Cermi_075.P1_TTAGGC.005)
May-10 16:51:08.382 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [98/635eec] Cached process > mapping (Cermi_075.P1_TTAGGC.005)
May-10 16:51:08.383 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [fe/71b678] Cached process > mapping (Bari3_100.P3_TTAGGC.002)
May-10 16:51:08.384 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [30/03f1d1] Cached process > mapping (Gunas_062.P3_ACAGTG.002)
May-10 16:51:08.385 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [48/9c1e91] Cached process > mapping (Gunas_062.P3_ACAGTG.002)
May-10 16:51:08.386 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [fe/598fff] Cached process > mapping (Gunas_062.P3_ACAGTG.002)
May-10 16:51:08.387 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [73/1f42f1] Cached process > mapping (Bari3_100.P3_TTAGGC.002)
May-10 16:51:08.388 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [73/210dc0] Cached process > mapping (Gunas_062.P3_ACAGTG.005)
May-10 16:51:08.408 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [52/eb496b] Cached process > mapping (Cermi_075.P1_TTAGGC.001)
May-10 16:51:08.489 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [d3/094042] Submitted process > mapping (Bari3_072C.P1_CGATGT.005)
May-10 16:51:08.498 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [86/907137] Submitted process > mapping (Ortan_066.P1_TAGCTT.002)
May-10 16:51:08.509 [Actor Thread 21] DEBUG n.daemon.CustomStealingCollisionSpi - Computing resources for node: `localhost` [master] > cpus: 12; mem: 31.3 GB; free disk: 73.4 GB (/tmp)
May-10 16:51:08.512 [Actor Thread 21] INFO nextflow.processor.TaskDispatcher - [47/2afd1a] Submitted process > mapping (Ortan_066.P1_TAGCTT.002)
May-10 16:51:08.516 [Actor Thread 29] INFO nextflow.processor.TaskDispatcher - [b7/89edba] Submitted process > mapping (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.520 [Actor Thread 30] INFO nextflow.processor.TaskDispatcher - [95/1b673f] Submitted process > mapping (Gunas_062.P3_ACAGTG.002)
May-10 16:51:08.523 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [44/fb97a0] Cached process > mapping (Cermi_075.P1_TTAGGC.002)
May-10 16:51:08.524 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [06/c4f766] Submitted process > mapping (Gunas_062.P3_ACAGTG.005)
May-10 16:51:08.526 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [f8/c7cf51] Cached process > mapping (Cermi_075.P1_TTAGGC.002)
May-10 16:51:08.529 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [e5/e5b836] Submitted process > mapping (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.534 [Actor Thread 1] INFO nextflow.processor.TaskDispatcher - [55/23db9d] Submitted process > mapping (Gunas_062.P3_ACAGTG.005)
May-10 16:51:08.535 [pub-#7%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Ortan_066.P1_TAGCTT.002) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/47/2afd1a198392fb60fe5117f5759375 - remote: false
May-10 16:51:08.535 [pub-#8%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Gunas_062.P3_ACAGTG.005) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/06/c4f7660f4f865dca1c41a890e010c8 - remote: false
May-10 16:51:08.536 [pub-#9%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Gunas_062.P3_ACAGTG.005) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/55/23db9d4d66daef6491a97b94cac0f4 - remote: false
May-10 16:51:08.538 [Actor Thread 31] INFO nextflow.processor.TaskDispatcher - [23/0764b8] Submitted process > mapping (Cermi_075.P1_TTAGGC.001)
May-10 16:51:08.541 [pub-#10%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Cermi_075.P1_TTAGGC.001) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/23/0764b8e1764cd4a5a4fed593749092 - remote: false
May-10 16:51:08.545 [pub-#11%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Cermi_075.P1_TTAGGC.001) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/cf/dfb9b4aa5ee501b2895572000b3a72 - remote: false
May-10 16:51:08.546 [Actor Thread 19] INFO nextflow.processor.TaskDispatcher - [8f/0a9040] Submitted process > mapping (Cermi_075.P1_TTAGGC.001)
May-10 16:51:08.550 [Actor Thread 10] INFO nextflow.processor.TaskDispatcher - [7c/cdaab8] Submitted process > mapping (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.553 [Actor Thread 24] INFO nextflow.processor.TaskDispatcher - [cf/dfb9b4] Submitted process > mapping (Cermi_075.P1_TTAGGC.001)
May-10 16:51:08.555 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [eb/13e701] Submitted process > mapping (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.557 [pub-#12%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Ortan_066.P5_TAGCTT.001) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/eb/13e7010dd87ae021df71939703abdb - remote: false
May-10 16:51:08.559 [Actor Thread 21] INFO nextflow.processor.TaskDispatcher - [e3/00d02d] Submitted process > mapping (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.562 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [02/db0dcc] Submitted process > mapping (Ortan_066.P5_TAGCTT.001)
May-10 16:51:08.566 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [32/6a9845] Cached process > mapping (Bari3_100.P3_TTAGGC.001)
May-10 16:51:08.567 [Actor Thread 30] INFO nextflow.processor.TaskDispatcher - [94/8aa858] Submitted process > mapping (Cermi_075.P1_TTAGGC.002)
May-10 16:51:08.568 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [63/b3eccc] Cached process > mapping (Bari3_100.P3_TTAGGC.001)
May-10 16:51:08.569 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [5a/2b1c60] Cached process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.570 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [f1/2e1eea] Submitted process > mapping (Ortan_066.P1_TAGCTT.005)
May-10 16:51:08.575 [Actor Thread 7] INFO nextflow.processor.TaskDispatcher - [40/3fc0d7] Submitted process > mapping (Cermi_075.P1_TTAGGC.002)
May-10 16:51:08.585 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [96/7d1dd9] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.601 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [5d/f28f28] Cached process > mapping (Gunas_062.P3_ACAGTG.003)
May-10 16:51:08.602 [Actor Thread 10] INFO nextflow.processor.TaskDispatcher - [72/248d57] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.619 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [84/39f5d0] Submitted process > mapping (Ortan_066.P1_TAGCTT.005)
May-10 16:51:08.628 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [96/8246fe] Cached process > mapping (Gunas_062.P3_ACAGTG.003)
May-10 16:51:08.632 [Actor Thread 31] INFO nextflow.processor.TaskDispatcher - [23/a484b9] Submitted process > mapping (Ortan_066.P1_TAGCTT.003)
May-10 16:51:08.636 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [97/20a2f3] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.636 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [5f/5718ae] Submitted process > mapping (Ortan_066.P1_TAGCTT.003)
May-10 16:51:08.640 [Actor Thread 24] INFO nextflow.processor.TaskDispatcher - [1e/d54aca] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.643 [Actor Thread 19] INFO nextflow.processor.TaskDispatcher - [d2/a99a12] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.650 [Actor Thread 10] INFO nextflow.processor.TaskDispatcher - [63/a3cd6f] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002)
May-10 16:51:08.653 [Actor Thread 1] INFO nextflow.processor.TaskDispatcher - [87/98ac73] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.660 [Actor Thread 7] INFO nextflow.processor.TaskDispatcher - [20/64e542] Submitted process > mapping (Gunas_062.P3_ACAGTG.003)
May-10 16:51:08.662 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [89/5daf21] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002)
May-10 16:51:08.665 [Actor Thread 31] INFO nextflow.processor.TaskDispatcher - [fc/66d10d] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002)
May-10 16:51:08.667 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [3a/0371ba] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002)
May-10 16:51:08.670 [Actor Thread 30] INFO nextflow.processor.TaskDispatcher - [e9/3269bc] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001)
May-10 16:51:08.673 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [c2/34a0ee] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002)
May-10 16:52:07.538 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=96c7d4b0, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.1%, avg=2.16%, GC=0%]
^-- Heap [used=324MB, free=95.45%, comm=784MB]
^-- Public thread pool [active=6, idle=18, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:53:07.540 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=96c7d4b0, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.07%, avg=1.17%, GC=0%]
^-- Heap [used=332MB, free=95.34%, comm=784MB]
^-- Public thread pool [active=6, idle=18, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:54:07.543 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=96c7d4b0, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.03%, avg=0.83%, GC=0%]
^-- Heap [used=338MB, free=95.26%, comm=784MB]
^-- Public thread pool [active=6, idle=18, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:55:07.549 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=96c7d4b0, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.03%, avg=0.7%, GC=0%]
^-- Heap [used=354MB, free=95.03%, comm=784MB]
^-- Public thread pool [active=6, idle=18, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:55:59.978 [Thread-2] DEBUG n.processor.TaskPollingMonitor - !! executor ignite > tasks to be completed: 34 -- first: TaskHandler[id: 114; name: mapping (Bari3_072C.P1_CGATGT.005); status: SUBMITTED; exit: -; workDir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d3/094042884f88bfe45ed351248a6141]
May-10 16:50:27.908 [main] DEBUG nextflow.cli.Launcher - $> /home/robsyme/bin/nextflow node
May-10 16:50:28.178 [main] INFO nextflow.daemon.IgDaemon - Configuring Apache Ignite cluster daemon
May-10 16:50:28.187 [main] DEBUG nextflow.daemon.IgGridFactory - Configuration properties for role: 'worker' -- [:]
May-10 16:50:28.249 [main] DEBUG nextflow.daemon.IgGridFactory - Apache Ignite config > group name: nextflow
May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Config URL: n/a
May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Daemon mode: off
May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS: Linux 4.4.0-21-generic amd64
May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS user: robsyme
May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Language runtime: Groovy
May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM information: OpenJDK Runtime Environment 1.8.0_91-8u91-b14-0ubuntu4~16.04.1-b14 Oracle Corporation OpenJDK 64-Bit Server VM 25.91-b14
May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM total memory: 3.5GB
May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Remote Management [restart: off, REST: on, JMX (remote: off)]
May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - IGNITE_HOME=null
May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM arguments: [-Xverify:none, -Djava.library.path=/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib, -Dcapsule.app=nextflow_0.18.3, -Djava.awt.headless=true, -Dcapsule.jar=/home/robsyme/.nextflow/framework/0.18.3/nextflow-0.18.3-one.jar]
May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Configured caches ['ignite-marshaller-sys-cache', 'ignite-sys-cache', 'ignite-atomics-sys-cache', 'allSessions', 'igfs-data', 'igfs-meta']
May-10 16:50:28.333 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Local node user attribute [ROLE=worker]
May-10 16:50:28.333 [pub-#5%nextflow%] WARN o.a.ignite.internal.GridDiagnostic - Initial heap size is 250MB (should be no less than 512MB, use -Xms512m -Xmx512m).
May-10 16:50:28.365 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Non-loopback local IPs: 134.7.56.24, fe80:0:0:0:6600:6aff:fe4e:5c67%enp0s25
May-10 16:50:28.365 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Enabled local MACs: 64006A4E5C67
May-10 16:50:28.373 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - Configured plugins:
May-10 16:50:28.373 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - ^-- None
May-10 16:50:28.373 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor -
May-10 16:50:28.418 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - IPC shared memory server endpoint started [port=48100, tokDir=/tmp/ignite/ipc/shmem/b559d768-45e2-45c8-b22b-4a352d4e6ea1-26197]
May-10 16:50:28.419 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound shared memory communication to TCP port [port=48100, locHost=0.0.0.0/0.0.0.0]
May-10 16:50:28.428 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound to TCP port [port=47100, locHost=0.0.0.0/0.0.0.0]
May-10 16:50:28.439 [main] WARN o.a.i.s.c.noop.NoopCheckpointSpi - Checkpoints are disabled (to enable configure any GridCheckpointSpi implementation)
May-10 16:50:28.451 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Registered SPI MBean: org.apache:clsLdr=74a14482,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi
May-10 16:50:28.451 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI started ok [startMs=0, spiMBean=org.apache:clsLdr=74a14482,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi]
May-10 16:50:28.453 [main] WARN o.a.i.s.s.noop.NoopSwapSpaceSpi - Swap space is disabled. To enable use FileSwapSpaceSpi.
May-10 16:50:28.454 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Security status [authentication=off, tls/ssl=off]
May-10 16:50:28.607 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully started [name=TCP binary, host=0.0.0.0/0.0.0.0, port=11211]
May-10 16:50:28.630 [main] INFO o.a.i.i.u.i.s.IpcSharedMemoryServerEndpoint - IPC shared memory server endpoint started [port=10500, tokDir=/tmp/ignite/ipc/shmem/b559d768-45e2-45c8-b22b-4a352d4e6ea1-26197]
May-10 16:50:28.631 [main] INFO o.a.i.i.u.i.l.IpcServerTcpEndpoint - IPC server loopback endpoint started [port=11400]
May-10 16:50:28.648 [main] INFO o.a.i.s.d.tcp.TcpDiscoverySpi - Successfully bound to TCP port [port=47500, localHost=0.0.0.0/0.0.0.0]
May-10 16:50:28.652 [main] WARN o.a.i.s.d.t.i.m.TcpDiscoveryMulticastIpFinder - TcpDiscoveryMulticastIpFinder has no pre-configured addresses (it is recommended in production to specify at least one address in TcpDiscoveryMulticastIpFinder.getAddresses() configuration property)
May-10 16:50:29.880 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FINISHED
May-10 16:50:29.881 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FAILED
May-10 16:50:29.881 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: JOB_MAPPED
May-10 16:50:29.975 [main] WARN o.a.i.i.p.c.GridCacheEvictionManager - <igfs-data> Evictions are not synchronized with other nodes in topology which provides 2x-3x better performance but may cause data inconsistency if cache store is not configured (consider changing 'evictSynchronized' configuration property).
May-10 16:50:30.002 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-data, mode=PARTITIONED]
May-10 16:50:30.006 [main] WARN o.a.i.i.p.cache.GridCacheProcessor - Eviction policy not enabled with ONHEAP_TIERED mode for cache (entries will not be moved to off-heap store): allSessions
May-10 16:50:30.044 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=allSessions, mode=PARTITIONED]
May-10 16:50:30.045 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-sys-cache, mode=REPLICATED]
May-10 16:50:30.047 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-atomics-sys-cache, mode=PARTITIONED]
May-10 16:50:30.049 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-meta, mode=REPLICATED]
May-10 16:50:30.050 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-marshaller-sys-cache, mode=REPLICATED]
May-10 16:50:30.162 [exchange-worker-#69%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Skipping rebalancing (nothing scheduled) [top=AffinityTopologyVersion [topVer=1, minorTopVer=0], evt=NODE_JOINED, node=b559d768-45e2-45c8-b22b-4a352d4e6ea1]
May-10 16:50:30.197 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Performance suggestions for grid 'nextflow' (fix if possible)
May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To disable, set -DIGNITE_PERFORMANCE_SUGGESTIONS_DISABLED=true
May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - ^-- Disable collision resolution (remove 'collisionSpi' from configuration)
May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To start Console Management & Monitoring run ignitevisorcmd.{sh|bat}
May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
May-10 16:50:30.199 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
>>> +----------------------------------------------------------------------------+
>>> Ignite ver. 1.5.0-final#20151229-sha1:f1f8cda2f3f62231f42a59951bf34c39577c1bec
>>> +----------------------------------------------------------------------------+
>>> OS name: Linux 4.4.0-21-generic amd64
>>> CPU(s): 12
>>> Heap: 3.5GB
>>> VM name: 26197@pisum
>>> Grid name: nextflow
>>> Local node [ID=B559D768-45E2-45C8-B22B-4A352D4E6EA1, order=1, clientMode=false]
>>> Local node addresses: [134.7.56.24/0:0:0:0:0:0:0:1%lo, /127.0.0.1, /134.7.56.24]
>>> Local ports: TCP:10500 TCP:11211 TCP:11400 TCP:47100 UDP:47400 TCP:47500 TCP:48100
May-10 16:50:30.200 [main] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=1, servers=1, clients=0, CPUs=12, heap=3.5GB]
May-10 16:50:30.201 [main] DEBUG nextflow.daemon.IgDaemon - Configuring Apache Ignite file system
May-10 16:50:30.209 [disco-event-worker-#66%nextflow%] DEBUG n.daemon.CustomStealingCollisionSpi - Computing resources for node: `localhost` [worker] > cpus: 12; mem: 15.6 GB; free disk: 182.8 GB (/tmp)
May-10 16:50:30.217 [main] DEBUG nextflow.file.FileHelper - Creating a file system instance for provider: IgFileSystemProvider
May-10 16:51:06.797 [disco-event-worker-#66%nextflow%] INFO o.a.i.i.m.d.GridDiscoveryManager - Added new node to topology: TcpDiscoveryNode [id=96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e, addrs=[0:0:0:0:0:0:0:1%lo, 127.0.0.1, 134.7.57.219, 172.17.0.1], sockAddrs=[/172.17.0.1:47500, /0:0:0:0:0:0:0:1%lo:47500, /134.7.57.219:47500, /127.0.0.1:47500, /134.7.57.219:47500, /172.17.0.1:47500], discPort=47500, order=2, intOrder=2, lastExchangeTime=1462870256654, loc=false, ver=1.5.0#20
May-10 16:51:06.797 [disco-event-worker-#66%nextflow%] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=2, servers=2, clients=0, CPUs=24, heap=10.0GB]
May-10 16:51:07.332 [exchange-worker-#69%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Skipping rebalancing (nothing scheduled) [top=AffinityTopologyVersion [topVer=2, minorTopVer=0], evt=NODE_JOINED, node=96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e]
May-10 16:51:30.205 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=b559d768, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.17%, avg=0.59%, GC=0%]
^-- Heap [used=212MB, free=94.02%, comm=484MB]
^-- Public thread pool [active=0, idle=24, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:52:30.203 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=b559d768, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.13%, avg=0.38%, GC=0%]
^-- Heap [used=221MB, free=93.76%, comm=484MB]
^-- Public thread pool [active=0, idle=24, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:53:30.211 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=b559d768, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.1%, avg=0.3%, GC=0%]
^-- Heap [used=228MB, free=93.56%, comm=484MB]
^-- Public thread pool [active=0, idle=24, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
May-10 16:54:30.209 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
Metrics for local node (to disable set 'metricsLogFrequency' to 0)
^-- Node [id=b559d768, name=nextflow]
^-- H/N/C [hosts=2, nodes=2, CPUs=24]
^-- CPU [cur=0.13%, avg=0.26%, GC=0%]
^-- Heap [used=235MB, free=93.37%, comm=484MB]
^-- Public thread pool [active=0, idle=24, qSize=0]
^-- System thread pool [active=0, idle=24, qSize=0]
^-- Outbound messages queue [size=0]
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