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Nextflow ignite rebalancing issues
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| May-10 16:50:54.334 [main] DEBUG nextflow.cli.Launcher - $> /home/robsyme/bin/nextflow run -resume -process.executor ignite main.nf | |
| May-10 16:50:54.375 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.18.3 | |
| May-10 16:50:54.375 [main] INFO nextflow.cli.CmdRun - Launching main.nf | |
| May-10 16:50:54.387 [main] DEBUG nextflow.config.ConfigBuilder - Found config home: /home/robsyme/.nextflow/config | |
| May-10 16:50:54.389 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/robsyme/.nextflow/config | |
| May-10 16:50:54.603 [main] DEBUG nextflow.config.ConfigBuilder - Setting config profile: 'standard' | |
| May-10 16:50:54.659 [main] DEBUG nextflow.Session - Session uuid: 71c4589d-7aba-4d95-a961-ec745527a86b | |
| May-10 16:50:54.660 [main] DEBUG nextflow.Session - Executor pool size: 12 | |
| May-10 16:50:54.669 [main] DEBUG nextflow.cli.CmdRun - | |
| Version: 0.18.3 build 3712 | |
| Modified: 09-05-2016 06:45 UTC (14:45 AWDT) | |
| System: Linux 4.2.0-30-generic | |
| Runtime: Groovy 2.4.5 on Java HotSpot(TM) 64-Bit Server VM 1.8.0_72-b15 | |
| Encoding: UTF-8 (UTF-8) | |
| Process: 9715@ppgserver [127.0.1.1] | |
| May-10 16:50:54.673 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/bin | |
| May-10 16:50:54.674 [main] DEBUG nextflow.Session - Session start invoked | |
| May-10 16:50:54.676 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start | |
| May-10 16:50:54.676 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing | |
| May-10 16:50:54.843 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution | |
| May-10 16:50:54.886 [main] DEBUG nextflow.processor.ProcessFactory - Discovered executor class: nextflow.executor.IgExecutor | |
| May-10 16:50:54.932 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
| May-10 16:50:54.932 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
| May-10 16:50:54.932 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
| May-10 16:50:54.938 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
| May-10 16:50:54.940 [main] INFO nextflow.executor.Executor - [warm up] executor > ignite | |
| May-10 16:50:54.944 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'ignite' > pollInterval: 5s; dumpInterval: 5m | |
| May-10 16:50:54.949 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: TaskPollingMonitor | |
| May-10 16:50:54.949 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: ignite) | |
| May-10 16:50:54.952 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: ignite | |
| May-10 16:50:54.981 [main] DEBUG nextflow.executor.IgConnector - Create Ignite master node | |
| May-10 16:50:54.995 [main] DEBUG nextflow.file.FileHelper - Creating a file system instance for provider: IgFileSystemProvider | |
| May-10 16:50:54.998 [main] DEBUG nextflow.daemon.IgGridFactory - Configuration properties for role: 'master' -- [:] | |
| May-10 16:50:55.034 [main] DEBUG nextflow.daemon.IgGridFactory - Apache Ignite config > group name: nextflow | |
| May-10 16:50:55.163 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Config URL: n/a | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Daemon mode: off | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS: Linux 4.2.0-30-generic amd64 | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS user: robsyme | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Language runtime: Groovy | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM information: Java(TM) SE Runtime Environment 1.8.0_72-b15 Oracle Corporation Java HotSpot(TM) 64-Bit Server VM 25.72-b15 | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM total memory: 7.0GB | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Remote Management [restart: off, REST: on, JMX (remote: off)] | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - IGNITE_HOME=null | |
| May-10 16:50:55.164 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM arguments: [-Xverify:none, -Djava.library.path=/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib, -Dcapsule.app=nextflow_0.18.3, -Djava.awt.headless=true, -Dcapsule.jar=/home/robsyme/.nextflow/framework/0.18.3/nextflow-0.18.3-one.jar] | |
| May-10 16:50:55.165 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Configured caches ['ignite-marshaller-sys-cache', 'ignite-sys-cache', 'ignite-atomics-sys-cache', 'allSessions', 'igfs-data', 'igfs-meta'] | |
| May-10 16:50:55.167 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Local node user attribute [ROLE=master] | |
| May-10 16:50:55.168 [pub-#6%nextflow%] WARN o.a.ignite.internal.GridDiagnostic - Initial heap size is 502MB (should be no less than 512MB, use -Xms512m -Xmx512m). | |
| May-10 16:50:55.200 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Non-loopback local IPs: 134.7.57.219, 172.17.0.1, fe80:0:0:0:9a90:96ff:fed7:1714%eth0 | |
| May-10 16:50:55.200 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Enabled local MACs: 0242B0C3C633, 989096D71714 | |
| May-10 16:50:55.205 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - Configured plugins: | |
| May-10 16:50:55.205 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - ^-- None | |
| May-10 16:50:55.205 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - | |
| May-10 16:50:55.244 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - IPC shared memory server endpoint started [port=48100, tokDir=/tmp/ignite/ipc/shmem/96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e-9715] | |
| May-10 16:50:55.244 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound shared memory communication to TCP port [port=48100, locHost=0.0.0.0/0.0.0.0] | |
| May-10 16:50:55.252 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound to TCP port [port=47100, locHost=0.0.0.0/0.0.0.0] | |
| May-10 16:50:55.262 [main] WARN o.a.i.s.c.noop.NoopCheckpointSpi - Checkpoints are disabled (to enable configure any GridCheckpointSpi implementation) | |
| May-10 16:50:55.274 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Registered SPI MBean: org.apache:clsLdr=55f96302,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi | |
| May-10 16:50:55.274 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI started ok [startMs=0, spiMBean=org.apache:clsLdr=55f96302,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi] | |
| May-10 16:50:55.276 [main] WARN o.a.i.s.s.noop.NoopSwapSpaceSpi - Swap space is disabled. To enable use FileSwapSpaceSpi. | |
| May-10 16:50:55.276 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Security status [authentication=off, tls/ssl=off] | |
| May-10 16:50:55.358 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully started [name=TCP binary, host=0.0.0.0/0.0.0.0, port=11211] | |
| May-10 16:50:55.385 [main] INFO o.a.i.i.u.i.s.IpcSharedMemoryServerEndpoint - IPC shared memory server endpoint started [port=10500, tokDir=/tmp/ignite/ipc/shmem/96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e-9715] | |
| May-10 16:50:55.386 [main] INFO o.a.i.i.u.i.l.IpcServerTcpEndpoint - IPC server loopback endpoint started [port=11400] | |
| May-10 16:50:55.404 [main] INFO o.a.i.s.d.tcp.TcpDiscoverySpi - Successfully bound to TCP port [port=47500, localHost=0.0.0.0/0.0.0.0] | |
| May-10 16:50:55.408 [main] WARN o.a.i.s.d.t.i.m.TcpDiscoveryMulticastIpFinder - TcpDiscoveryMulticastIpFinder has no pre-configured addresses (it is recommended in production to specify at least one address in TcpDiscoveryMulticastIpFinder.getAddresses() configuration property) | |
| May-10 16:51:01.669 [main] WARN o.a.i.s.d.tcp.TcpDiscoverySpi - Node has not been connected to topology and will repeat join process. Check remote nodes logs for possible error messages. Note that large topology may require significant time to start. Increase 'TcpDiscoverySpi.networkTimeout' configuration property if getting this message on the starting nodes [networkTimeout=5000] | |
| May-10 16:51:06.821 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FINISHED | |
| May-10 16:51:06.822 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FAILED | |
| May-10 16:51:06.822 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: JOB_MAPPED | |
| May-10 16:51:06.923 [main] WARN o.a.i.i.p.c.GridCacheEvictionManager - <igfs-data> Evictions are not synchronized with other nodes in topology which provides 2x-3x better performance but may cause data inconsistency if cache store is not configured (consider changing 'evictSynchronized' configuration property). | |
| May-10 16:51:06.959 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-data, mode=PARTITIONED] | |
| May-10 16:51:06.965 [main] WARN o.a.i.i.p.cache.GridCacheProcessor - Eviction policy not enabled with ONHEAP_TIERED mode for cache (entries will not be moved to off-heap store): allSessions | |
| May-10 16:51:07.024 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=allSessions, mode=PARTITIONED] | |
| May-10 16:51:07.028 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-sys-cache, mode=REPLICATED] | |
| May-10 16:51:07.031 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-atomics-sys-cache, mode=PARTITIONED] | |
| May-10 16:51:07.036 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-meta, mode=REPLICATED] | |
| May-10 16:51:07.038 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-marshaller-sys-cache, mode=REPLICATED] | |
| May-10 16:51:07.433 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=ignite-sys-cache, waitList=[]] | |
| May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=ignite-marshaller-sys-cache, waitList=[]] | |
| May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=ignite-atomics-sys-cache, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache]] | |
| May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=igfs-data, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache, ignite-atomics-sys-cache]] | |
| May-10 16:51:07.434 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=allSessions, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache, ignite-atomics-sys-cache]] | |
| May-10 16:51:07.435 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Cache rebalancing scheduled: [cache=igfs-meta, waitList=[ignite-sys-cache, ignite-marshaller-sys-cache, ignite-atomics-sys-cache]] | |
| May-10 16:51:07.438 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Rebalancing required[top=AffinityTopologyVersion [topVer=2, minorTopVer=0], evt=NODE_JOINED, node=96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e] | |
| May-10 16:51:07.439 [exchange-worker-#68%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-marshaller-sys-cache> Starting rebalancing [cache=ignite-marshaller-sys-cache, mode=SYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=20, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1] | |
| May-10 16:51:07.443 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-sys-cache> Starting rebalancing [cache=ignite-sys-cache, mode=SYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=100, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1] | |
| May-10 16:51:07.458 [marshaller-cache-#72%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-marshaller-sys-cache> Completed (final) rebalancing [cache=ignite-marshaller-sys-cache, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=20 ms] | |
| May-10 16:51:07.463 [marshaller-cache-#72%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-sys-cache> Completed (final) rebalancing [cache=ignite-sys-cache, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=20 ms] | |
| May-10 16:51:07.464 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-atomics-sys-cache> Starting rebalancing [cache=ignite-atomics-sys-cache, mode=SYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=490, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1] | |
| May-10 16:51:07.484 [sys-#28%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <ignite-atomics-sys-cache> Completed (final) rebalancing [cache=ignite-atomics-sys-cache, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=20 ms] | |
| May-10 16:51:07.485 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-data> Starting rebalancing [cache=igfs-data, mode=ASYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=490, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1] | |
| May-10 16:51:07.486 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <allSessions> Starting rebalancing [cache=allSessions, mode=ASYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=490, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1] | |
| May-10 16:51:07.487 [sys-#27%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-meta> Starting rebalancing [cache=igfs-meta, mode=ASYNC, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, partitionsCount=512, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], updateSeq=1] | |
| May-10 16:51:07.529 [sys-#29%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-data> Completed (final) rebalancing [cache=igfs-data, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=40 ms] | |
| May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Performance suggestions for grid 'nextflow' (fix if possible) | |
| May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To disable, set -DIGNITE_PERFORMANCE_SUGGESTIONS_DISABLED=true | |
| May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - ^-- Disable collision resolution (remove 'collisionSpi' from configuration) | |
| May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To start Console Management & Monitoring run ignitevisorcmd.{sh|bat} | |
| May-10 16:51:07.540 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| May-10 16:51:07.541 [sys-#30%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <allSessions> Completed (final) rebalancing [cache=allSessions, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=50 ms] | |
| May-10 16:51:07.541 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| >>> +----------------------------------------------------------------------------+ | |
| >>> Ignite ver. 1.5.0-final#20151229-sha1:f1f8cda2f3f62231f42a59951bf34c39577c1bec | |
| >>> +----------------------------------------------------------------------------+ | |
| >>> OS name: Linux 4.2.0-30-generic amd64 | |
| >>> CPU(s): 12 | |
| >>> Heap: 7.0GB | |
| >>> VM name: 9715@ppgserver | |
| >>> Grid name: nextflow | |
| >>> Local node [ID=96C7D4B0-DC9B-4A9D-9A50-1B87BD4C512E, order=2, clientMode=false] | |
| >>> Local node addresses: [172.17.0.1/0:0:0:0:0:0:0:1%lo, 134.7.57.219/127.0.0.1, /134.7.57.219, /172.17.0.1] | |
| >>> Local ports: TCP:10500 TCP:11211 TCP:11400 TCP:47100 UDP:47400 TCP:47500 TCP:48100 | |
| May-10 16:51:07.543 [main] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=2, servers=2, clients=0, CPUs=24, heap=10.0GB] | |
| May-10 16:51:07.549 [sys-#30%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPartitionDemander - <igfs-meta> Completed (final) rebalancing [cache=igfs-meta, fromNode=b559d768-45e2-45c8-b22b-4a352d4e6ea1, topology=AffinityTopologyVersion [topVer=2, minorTopVer=0], time=60 ms] | |
| May-10 16:51:07.623 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> slots: 24 | |
| May-10 16:51:07.625 [Topology watcher] DEBUG n.processor.TaskPollingMonitor - Monitor current capacity: 34 (after inc: 34) | |
| May-10 16:51:07.631 [main] DEBUG nextflow.util.RemoteSession - Packed library (32 files) at path: /tmp/nxf-4216427704367695635 | |
| May-10 16:51:07.748 [main] DEBUG nextflow.executor.IgConnector - Cluster shutdownOnComplete: false | |
| May-10 16:51:07.801 [main] DEBUG nextflow.Session - >>> barrier register (process: buildIndex) | |
| May-10 16:51:07.824 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > buildIndex -- maxForks: 12 | |
| May-10 16:51:07.844 [main] DEBUG nextflow.Channel - files for syntax: glob; folder: data/; pattern: *.txt.gz; options: null | |
| May-10 16:51:07.900 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
| May-10 16:51:07.900 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
| May-10 16:51:07.901 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
| May-10 16:51:07.901 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
| May-10 16:51:07.902 [main] DEBUG nextflow.Session - >>> barrier register (process: trimming) | |
| May-10 16:51:07.910 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > trimming -- maxForks: 12 | |
| May-10 16:51:07.931 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [62/4b1a93] Cached process > buildIndex (1) | |
| May-10 16:51:07.948 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <buildIndex> Sending poison pills and terminating process | |
| May-10 16:51:07.950 [Actor Thread 2] DEBUG nextflow.Session - <<< barrier arrive (process: buildIndex) | |
| May-10 16:51:07.951 [Actor Thread 3] DEBUG n.processor.ParallelTaskProcessor - <buildIndex> After stop | |
| May-10 16:51:07.958 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
| May-10 16:51:07.958 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
| May-10 16:51:07.958 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
| May-10 16:51:07.958 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
| May-10 16:51:07.959 [main] DEBUG nextflow.Session - >>> barrier register (process: mapping) | |
| May-10 16:51:07.970 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > mapping -- maxForks: 12 | |
| May-10 16:51:07.974 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
| May-10 16:51:07.974 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
| May-10 16:51:07.974 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
| May-10 16:51:07.974 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
| May-10 16:51:07.974 [main] DEBUG nextflow.Session - >>> barrier register (process: mergeBams1) | |
| May-10 16:51:07.981 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > mergeBams1 -- maxForks: 12 | |
| May-10 16:51:07.987 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
| May-10 16:51:07.987 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
| May-10 16:51:07.987 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
| May-10 16:51:07.988 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
| May-10 16:51:07.988 [main] DEBUG nextflow.Session - >>> barrier register (process: markDuplicates) | |
| May-10 16:51:08.237 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > markDuplicates -- maxForks: 12 | |
| May-10 16:51:08.244 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
| May-10 16:51:08.244 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
| May-10 16:51:08.244 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
| May-10 16:51:08.244 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
| May-10 16:51:08.245 [main] DEBUG nextflow.Session - >>> barrier register (process: mergeBams) | |
| May-10 16:51:08.255 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > mergeBams -- maxForks: 12 | |
| May-10 16:51:08.258 [main] DEBUG nextflow.script.ScriptRunner - > Await termination | |
| May-10 16:51:08.258 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [56/90ee4f] Cached process > trimming (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.258 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [f7/ed1c59] Cached process > trimming (Ortan_066.P1_TAGCTT.001) | |
| May-10 16:51:08.258 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [2b/c81105] Cached process > trimming (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.258 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [94/e1c848] Cached process > trimming (Bari3_072C.P1_CGATGT.001) | |
| May-10 16:51:08.259 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [71/00c2f6] Cached process > trimming (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.259 [main] DEBUG nextflow.Session - Session await | |
| May-10 16:51:08.259 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [a8/189438] Cached process > trimming (Bari3_106D.P1_TGACCA.004) | |
| May-10 16:51:08.259 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [75/37c7a0] Cached process > trimming (Gunas_062.P3_ACAGTG.001) | |
| May-10 16:51:08.259 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [4d/128a5d] Cached process > trimming (Bari3_100.P3_TTAGGC.005) | |
| May-10 16:51:08.259 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [9a/835a8b] Cached process > trimming (Deste_080.P3_TGACCA.003) | |
| May-10 16:51:08.258 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [61/fba5a8] Cached process > trimming (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.259 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [b2/72a6ef] Cached process > trimming (Bari3_072C.P1_CGATGT.002) | |
| May-10 16:51:08.259 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [82/2d987e] Cached process > trimming (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.263 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/7b3e83d405eaf6953c9bcdc9219cfd/output_reverse_paired.fq | |
| May-10 16:51:08.263 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f5/ee6240a047c3d00f6f0b6c0f32b799/output_forward_paired.fq | |
| May-10 16:51:08.268 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f5/ee6240a047c3d00f6f0b6c0f32b799/output_forward_paired.fq | |
| May-10 16:51:08.268 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/7b3e83d405eaf6953c9bcdc9219cfd/output_reverse_paired.fq | |
| May-10 16:51:08.268 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [36/4af931] Cached process > trimming (Ortan_066.P1_TAGCTT.002) | |
| May-10 16:51:08.268 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/09/655b2ea4e32580e9adf84859fae52d/output_forward_paired.fq | |
| May-10 16:51:08.268 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d7/4387bb552542bf509617ae591d706d/output_reverse_paired.fq | |
| May-10 16:51:08.269 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/09/655b2ea4e32580e9adf84859fae52d/output_forward_paired.fq | |
| May-10 16:51:08.269 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d7/4387bb552542bf509617ae591d706d/output_reverse_paired.fq | |
| May-10 16:51:08.270 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1a/38538ba7fe9707c79c406c254ef2a4/output_reverse_paired.fq | |
| May-10 16:51:08.270 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [b2/d473ec] Cached process > trimming (Gunas_062.P3_ACAGTG.002) | |
| May-10 16:51:08.271 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1a/38538ba7fe9707c79c406c254ef2a4/output_reverse_paired.fq | |
| May-10 16:51:08.271 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a4/a30e868e44eb7ec0bb04a924476565/output_reverse_paired.fq | |
| May-10 16:51:08.272 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a4/a30e868e44eb7ec0bb04a924476565/output_reverse_paired.fq | |
| May-10 16:51:08.273 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8e/9fae5bd8b385f0bd62615b306231f6/output_reverse_paired.fq | |
| May-10 16:51:08.273 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8e/9fae5bd8b385f0bd62615b306231f6/output_reverse_paired.fq | |
| May-10 16:51:08.274 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/17/13a0639d5c1c551f8eb28c1a027a90/output_reverse_paired.fq | |
| May-10 16:51:08.274 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/17/13a0639d5c1c551f8eb28c1a027a90/output_reverse_paired.fq | |
| May-10 16:51:08.278 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [2a/70d6da] Cached process > trimming (Bari3_100.P3_TTAGGC.002) | |
| May-10 16:51:08.278 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [2f/c20c23] Cached process > trimming (Cermi_075.P1_TTAGGC.005) | |
| May-10 16:51:08.278 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [e7/0fbb61] Cached process > trimming (Deste_080.P3_TGACCA.004) | |
| May-10 16:51:08.280 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c7/f63677158222ad0e06a21103ce6ce7/output_reverse_paired.fq | |
| May-10 16:51:08.280 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ef/ccfd34505ff3248d0ff03905c3ba7d/output_forward_paired.fq | |
| May-10 16:51:08.281 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ef/ccfd34505ff3248d0ff03905c3ba7d/output_forward_paired.fq | |
| May-10 16:51:08.281 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c7/f63677158222ad0e06a21103ce6ce7/output_reverse_paired.fq | |
| May-10 16:51:08.281 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [80/86853f] Cached process > mapping (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.281 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/40/bba413fb950a4f520ce0da90feccea/output_forward_paired.fq | |
| May-10 16:51:08.281 [Actor Thread 17] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/05/7c3f7dda3af99223fad11dcaeed056/output_reverse_paired.fq | |
| May-10 16:51:08.282 [Actor Thread 17] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/05/7c3f7dda3af99223fad11dcaeed056/output_reverse_paired.fq | |
| May-10 16:51:08.282 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/40/bba413fb950a4f520ce0da90feccea/output_forward_paired.fq | |
| May-10 16:51:08.283 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c3/5158c038ad9f626e3d82f45b330c6d/output_forward_paired.fq | |
| May-10 16:51:08.283 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c3/5158c038ad9f626e3d82f45b330c6d/output_forward_paired.fq | |
| May-10 16:51:08.283 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/25/cecd0cdb277da301680b2502beea99/output_forward_paired.fq | |
| May-10 16:51:08.283 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/25/cecd0cdb277da301680b2502beea99/output_forward_paired.fq | |
| May-10 16:51:08.284 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [3d/d3b60f] Cached process > trimming (Bari3_072C.P1_CGATGT.005) | |
| May-10 16:51:08.284 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6f/d409b20a641673ccaa64e05453290c/output_forward_paired.fq | |
| May-10 16:51:08.284 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6f/d409b20a641673ccaa64e05453290c/output_forward_paired.fq | |
| May-10 16:51:08.285 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [e8/c28e22] Cached process > trimming (Bari3_106D.P1_TGACCA.003) | |
| May-10 16:51:08.286 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [74/32e7fb] Cached process > mapping (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.289 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [e4/1e8b37] Cached process > mapping (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.289 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [99/e238f3] Cached process > mapping (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.289 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [ab/a6a4ca] Cached process > mapping (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.289 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/18/6c6cd3bd333626f4df456fd89dde88/output_forward_paired.fq | |
| May-10 16:51:08.289 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/18/6c6cd3bd333626f4df456fd89dde88/output_forward_paired.fq | |
| May-10 16:51:08.290 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3e/11e547e48457fc6f526895d879b87c/output_reverse_paired.fq | |
| May-10 16:51:08.290 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [de/85bb3b] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.291 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [67/75dcf3] Cached process > mapping (Bari3_072C.P6_CGATGT.001) | |
| May-10 16:51:08.291 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3a/10d519181a2f52d8a9ac400a06a71d/output_forward_paired.fq | |
| May-10 16:51:08.291 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3a/10d519181a2f52d8a9ac400a06a71d/output_forward_paired.fq | |
| May-10 16:51:08.292 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f0/321d8b311552a38ef06d2a895c8c60/output_forward_paired.fq | |
| May-10 16:51:08.292 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [51/2b16cb] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.292 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f0/321d8b311552a38ef06d2a895c8c60/output_forward_paired.fq | |
| May-10 16:51:08.293 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/27ae3fbb70af1040f95fde64f571b9/output_forward_paired.fq | |
| May-10 16:51:08.293 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/27ae3fbb70af1040f95fde64f571b9/output_forward_paired.fq | |
| May-10 16:51:08.293 [Actor Thread 26] INFO nextflow.processor.TaskProcessor - [04/02d207] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.293 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/bb/2978e0e2395205e92268b8308ab6d8/output_forward_paired.fq | |
| May-10 16:51:08.294 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/bb/2978e0e2395205e92268b8308ab6d8/output_forward_paired.fq | |
| May-10 16:51:08.294 [Actor Thread 3] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/0bc7b4067e916eb9e058643f222d36/output_forward_paired.fq | |
| May-10 16:51:08.294 [Actor Thread 3] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/0bc7b4067e916eb9e058643f222d36/output_forward_paired.fq | |
| May-10 16:51:08.294 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [8e/bb21aa] Cached process > trimming (Gunas_062.P3_ACAGTG.005) | |
| May-10 16:51:08.297 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [0e/061b08] Cached process > trimming (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.297 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [5b/cadf96] Cached process > trimming (Cermi_075.P1_TTAGGC.001) | |
| May-10 16:51:08.299 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [78/1ca549] Cached process > trimming (Cermi_075.P1_TTAGGC.002) | |
| May-10 16:51:08.299 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [7a/32ce6f] Cached process > trimming (Ortan_066.P1_TAGCTT.005) | |
| May-10 16:51:08.300 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3e/11e547e48457fc6f526895d879b87c/output_reverse_paired.fq | |
| May-10 16:51:08.300 [Actor Thread 19] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d3/9d3a08a32545c910d8d0eda150e454/output_forward_paired.fq | |
| May-10 16:51:08.300 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d8/25acedd2919f763f06fa40720db150/output_reverse_paired.fq | |
| May-10 16:51:08.300 [Actor Thread 19] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d3/9d3a08a32545c910d8d0eda150e454/output_forward_paired.fq | |
| May-10 16:51:08.301 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d8/25acedd2919f763f06fa40720db150/output_reverse_paired.fq | |
| May-10 16:51:08.301 [Actor Thread 19] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9c/f54d926648f67f7856c125387b02de/output_forward_paired.fq | |
| May-10 16:51:08.301 [Actor Thread 25] INFO nextflow.processor.TaskProcessor - [d5/8b9fc9] Cached process > trimming (Bari3_100.P3_TTAGGC.001) | |
| May-10 16:51:08.301 [Actor Thread 19] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9c/f54d926648f67f7856c125387b02de/output_forward_paired.fq | |
| May-10 16:51:08.302 [Actor Thread 19] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/f1e78a60c62a9cda1ec317a9235626/output_forward_paired.fq | |
| May-10 16:51:08.302 [Actor Thread 19] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8b/f1e78a60c62a9cda1ec317a9235626/output_forward_paired.fq | |
| May-10 16:51:08.303 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [a6/e1ec6a] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.303 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [c0/e7e02f] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.304 [Actor Thread 15] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/5e/e04eeb58ec4d50ce3aaea399cd823a/output_forward_paired.fq | |
| May-10 16:51:08.304 [Actor Thread 15] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/5e/e04eeb58ec4d50ce3aaea399cd823a/output_forward_paired.fq | |
| May-10 16:51:08.304 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [ec/d191b5] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.304 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [f4/277a19] Cached process > trimming (Ortan_066.P1_TAGCTT.003) | |
| May-10 16:51:08.304 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [9d/207001] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.305 [Actor Thread 15] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/74cbb04aa07f47522f29089ed5c41c/output_forward_paired.fq | |
| May-10 16:51:08.305 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [c0/259274] Cached process > trimming (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.305 [Actor Thread 15] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/74cbb04aa07f47522f29089ed5c41c/output_forward_paired.fq | |
| May-10 16:51:08.306 [Actor Thread 15] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/526e3f2196ceb3e5a05268222da9d7/output_forward_paired.fq | |
| May-10 16:51:08.306 [Actor Thread 15] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/526e3f2196ceb3e5a05268222da9d7/output_forward_paired.fq | |
| May-10 16:51:08.307 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [5e/e7d977] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.308 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/aa/05b5963d1f4ff96f7f49bdd803ba83/output_forward_paired.fq | |
| May-10 16:51:08.308 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [cf/2aae9e] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.309 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [63/78b39c] Cached process > mapping (CDCLuna.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.309 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [60/fb9b9f] Cached process > trimming (Gunas_062.P3_ACAGTG.003) | |
| May-10 16:51:08.310 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [36/209bd1] Cached process > mapping (Bari3_072C.P1_CGATGT.002) | |
| May-10 16:51:08.310 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/aa/05b5963d1f4ff96f7f49bdd803ba83/output_forward_paired.fq | |
| May-10 16:51:08.311 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [cd/5e47bd] Cached process > trimming (Bari2_072n2.P7_CGATGT.002) | |
| May-10 16:51:08.311 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/64/c674bc4c9766343d0800445d72f62d/output_reverse_paired.fq | |
| May-10 16:51:08.311 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0b/e037d7c15d93bc32bcccedb3bbb471/output_forward_paired.fq | |
| May-10 16:51:08.312 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0b/e037d7c15d93bc32bcccedb3bbb471/output_forward_paired.fq | |
| May-10 16:51:08.312 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4f/f4b3f47005abac3ac561db13bbfe89/output_forward_paired.fq | |
| May-10 16:51:08.312 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [54/ee080d] Cached process > mapping (Bari3_072C.P1_CGATGT.002) | |
| May-10 16:51:08.313 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4f/f4b3f47005abac3ac561db13bbfe89/output_forward_paired.fq | |
| May-10 16:51:08.313 [Actor Thread 4] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/9233e6e485a40ebb4d8bdb87d5057a/output_forward_paired.fq | |
| May-10 16:51:08.313 [Actor Thread 4] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/9233e6e485a40ebb4d8bdb87d5057a/output_forward_paired.fq | |
| May-10 16:51:08.314 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/64/c674bc4c9766343d0800445d72f62d/output_reverse_paired.fq | |
| May-10 16:51:08.314 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [a9/7bd0f0] Cached process > trimming (Bari2_072n2.P7_CGATGT.001) | |
| May-10 16:51:08.314 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [e8/dc8de8] Cached process > trimming (Cermi_075.P1_TTAGGC.004) | |
| May-10 16:51:08.314 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [a5/1b0aa4] Cached process > trimming (Bari3_072C.P1_CGATGT.003) | |
| May-10 16:51:08.314 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/fb/4f352b8c4354f2a01dce3015669c9e/output_reverse_paired.fq | |
| May-10 16:51:08.315 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/fb/4f352b8c4354f2a01dce3015669c9e/output_reverse_paired.fq | |
| May-10 16:51:08.315 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/dd4a7d34256209c3e02bac7db12ca9/output_reverse_paired.fq | |
| May-10 16:51:08.316 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/30/dd4a7d34256209c3e02bac7db12ca9/output_reverse_paired.fq | |
| May-10 16:51:08.316 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f1/654bad1283b5dcda16ea1334362710/output_reverse_paired.fq | |
| May-10 16:51:08.317 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [74/99bb18] Cached process > trimming (Deste_080.P3_TGACCA.002) | |
| May-10 16:51:08.317 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/f1/654bad1283b5dcda16ea1334362710/output_reverse_paired.fq | |
| May-10 16:51:08.317 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6c/3bc61257c3b82859cae61f461288b1/output_forward_paired.fq | |
| May-10 16:51:08.318 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/6c/3bc61257c3b82859cae61f461288b1/output_forward_paired.fq | |
| May-10 16:51:08.318 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/13/c85ead3b14f1c253b611cfb4c653a8/output_reverse_paired.fq | |
| May-10 16:51:08.318 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/59/4917137a7f08b003017ad1b1903ead/output_forward_paired.fq | |
| May-10 16:51:08.318 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/13/c85ead3b14f1c253b611cfb4c653a8/output_reverse_paired.fq | |
| May-10 16:51:08.319 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/59/4917137a7f08b003017ad1b1903ead/output_forward_paired.fq | |
| May-10 16:51:08.319 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b2/458a7843ca38decc61470d58e5b9ee/output_reverse_paired.fq | |
| May-10 16:51:08.319 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/92/f345a2946c2bc8219c3a836929b4ab/output_forward_paired.fq | |
| May-10 16:51:08.319 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b2/458a7843ca38decc61470d58e5b9ee/output_reverse_paired.fq | |
| May-10 16:51:08.320 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d90ee8082bf38987217def6ddfffa1/output_reverse_paired.fq | |
| May-10 16:51:08.320 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/92/f345a2946c2bc8219c3a836929b4ab/output_forward_paired.fq | |
| May-10 16:51:08.320 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [0b/508452] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.321 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d90ee8082bf38987217def6ddfffa1/output_reverse_paired.fq | |
| May-10 16:51:08.321 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [0d/097c44] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.322 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [1c/33272f] Cached process > trimming (Deste_080.P3_TGACCA.001) | |
| May-10 16:51:08.322 [Actor Thread 25] INFO nextflow.processor.TaskProcessor - [97/e9e273] Cached process > trimming (Ortan_066.P1_TAGCTT.004) | |
| May-10 16:51:08.323 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [de/dd1ff1] Cached process > trimming (Bari3_100.P5_TTAGGC.001) | |
| May-10 16:51:08.323 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/48d93c54bce79c112b2ecb7e3002f8/output_forward_paired.fq | |
| May-10 16:51:08.324 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [ec/1e3dd3] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.324 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [9a/bae5a4] Cached process > trimming (CDCLeader.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.326 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [e4/d0fdaa] Cached process > trimming (Cermi_075.P1_TTAGGC.003) | |
| May-10 16:51:08.327 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [e6/b7fa8c] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.328 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [60/a2b4d2] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.328 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [a6/9aa798] Cached process > trimming (Bari3_106D.P1_TGACCA.005) | |
| May-10 16:51:08.328 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [51/8cfdd3] Cached process > mapping (Deste_080.P3_TGACCA.003) | |
| May-10 16:51:08.329 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [ec/945a48] Cached process > mapping (Bari3_100.P3_TTAGGC.005) | |
| May-10 16:51:08.330 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [2d/cf28e6] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.331 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [e4/ac64e0] Cached process > trimming (Bari3_100.P3_TTAGGC.004) | |
| May-10 16:51:08.332 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/35/8ddd166c27008f41f8a7ebddd4c046/output_reverse_paired.fq | |
| May-10 16:51:08.332 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [9c/fb045c] Cached process > mapping (Deste_080.P3_TGACCA.003) | |
| May-10 16:51:08.332 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9e/48d93c54bce79c112b2ecb7e3002f8/output_forward_paired.fq | |
| May-10 16:51:08.332 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [57/aab632] Cached process > trimming (Bari3_106D.P4_TGACCA.001) | |
| May-10 16:51:08.333 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [2f/eeca45] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.333 [Actor Thread 32] INFO nextflow.processor.TaskProcessor - [0a/7585e7] Cached process > mapping (Bari2_072n2.P7_CGATGT.003) | |
| May-10 16:51:08.334 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [14/b3a300] Cached process > mapping (Deste_080.P3_TGACCA.003) | |
| May-10 16:51:08.335 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [06/b88cd8] Cached process > trimming (Bari3_100.P3_TTAGGC.003) | |
| May-10 16:51:08.336 [Actor Thread 15] INFO nextflow.processor.TaskProcessor - [a3/279b6c] Cached process > trimming (Bari3_106D.P1_TGACCA.002) | |
| May-10 16:51:08.336 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/35/8ddd166c27008f41f8a7ebddd4c046/output_reverse_paired.fq | |
| May-10 16:51:08.336 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/63/e4a40f11a1e8f08b7397ada2f92e05/output_forward_paired.fq | |
| May-10 16:51:08.337 [Actor Thread 5] DEBUG n.processor.ParallelTaskProcessor - <trimming> Poison pill arrived | |
| May-10 16:51:08.340 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [87/43a714] Cached process > mapping (Gunas_062.P3_ACAGTG.001) | |
| May-10 16:51:08.340 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [ed/3ed35f] Cached process > trimming (Deste_080.P3_TGACCA.005) | |
| May-10 16:51:08.340 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [a5/ca99ec] Cached process > trimming (Bari3_106D.P1_TGACCA.001) | |
| May-10 16:51:08.340 [Actor Thread 16] INFO nextflow.processor.TaskProcessor - [cf/d340a0] Cached process > trimming (Gunas_062.P3_ACAGTG.004) | |
| May-10 16:51:08.340 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [91/f25d68] Cached process > mapping (Bari3_100.P3_TTAGGC.005) | |
| May-10 16:51:08.341 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [5b/d8a920] Cached process > mapping (Gunas_062.P3_ACAGTG.001) | |
| May-10 16:51:08.342 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/63/e4a40f11a1e8f08b7397ada2f92e05/output_forward_paired.fq | |
| May-10 16:51:08.344 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4e/bc7cb243a1ddd54b8a1a72bdfedac8/output_reverse_paired.fq | |
| May-10 16:51:08.344 [Actor Thread 2] DEBUG nextflow.processor.StateObj - <trimming> State before poison: StateObj[submitted: 47; completed: 38; poisoned: false; allScalar: false] | |
| May-10 16:51:08.345 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [ce/35af6a] Cached process > mapping (Gunas_062.P3_ACAGTG.001) | |
| May-10 16:51:08.345 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [4a/780fcf] Cached process > trimming (Bari3_072C.P1_CGATGT.004) | |
| May-10 16:51:08.345 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/85/02c73702e4330bc165422ec345dd80/output_forward_paired.fq | |
| May-10 16:51:08.345 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/4e/bc7cb243a1ddd54b8a1a72bdfedac8/output_reverse_paired.fq | |
| May-10 16:51:08.346 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c1/5ddca99def174eb364f9f0cb68870b/output_reverse_paired.fq | |
| May-10 16:51:08.346 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [fd/96251f] Cached process > mapping (Bari3_106D.P1_TGACCA.004) | |
| May-10 16:51:08.346 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/85/02c73702e4330bc165422ec345dd80/output_forward_paired.fq | |
| May-10 16:51:08.346 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [f4/a8119e] Cached process > mapping (Bari3_106D.P1_TGACCA.004) | |
| May-10 16:51:08.346 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c1/5ddca99def174eb364f9f0cb68870b/output_reverse_paired.fq | |
| May-10 16:51:08.346 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/e7/275451bed8466bb01a7818b148decd/output_forward_paired.fq | |
| May-10 16:51:08.346 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1e/bf11c90294fcc2ea9a278b38d7b711/output_reverse_paired.fq | |
| May-10 16:51:08.347 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/e7/275451bed8466bb01a7818b148decd/output_forward_paired.fq | |
| May-10 16:51:08.347 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/1e/bf11c90294fcc2ea9a278b38d7b711/output_reverse_paired.fq | |
| May-10 16:51:08.347 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/707303e7b51081bf6495a2a76646c5/output_forward_paired.fq | |
| May-10 16:51:08.347 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/83/36ad54c5215dfde16b49494fb3680e/output_reverse_paired.fq | |
| May-10 16:51:08.347 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [9d/29a3f7] Cached process > mapping (Gunas_062.P3_ACAGTG.001) | |
| May-10 16:51:08.347 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [f7/6f46e3] Cached process > mapping (Deste_080.P3_TGACCA.004) | |
| May-10 16:51:08.348 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/707303e7b51081bf6495a2a76646c5/output_forward_paired.fq | |
| May-10 16:51:08.348 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/83/36ad54c5215dfde16b49494fb3680e/output_reverse_paired.fq | |
| May-10 16:51:08.348 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d6/aa4388e861f5b31b256d3f01757544/output_forward_paired.fq | |
| May-10 16:51:08.348 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/21/1de1ccf19f87fe0309ba6b951ac40e/output_reverse_paired.fq | |
| May-10 16:51:08.348 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d6/aa4388e861f5b31b256d3f01757544/output_forward_paired.fq | |
| May-10 16:51:08.349 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/21/1de1ccf19f87fe0309ba6b951ac40e/output_reverse_paired.fq | |
| May-10 16:51:08.349 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ff/0ace710bfe55474cf6f5df51c46ebe/output_forward_paired.fq | |
| May-10 16:51:08.349 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7c/c148a1fcbaaa4b4041c968e6772c73/output_reverse_paired.fq | |
| May-10 16:51:08.349 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ff/0ace710bfe55474cf6f5df51c46ebe/output_forward_paired.fq | |
| May-10 16:51:08.349 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7c/c148a1fcbaaa4b4041c968e6772c73/output_reverse_paired.fq | |
| May-10 16:51:08.349 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c0/11b47c91615759b7b92ee3d125cb36/output_forward_paired.fq | |
| May-10 16:51:08.350 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/d5fd2c712eeb3035bea84b4f817680/output_reverse_paired.fq | |
| May-10 16:51:08.350 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c0/11b47c91615759b7b92ee3d125cb36/output_forward_paired.fq | |
| May-10 16:51:08.350 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/22/d5fd2c712eeb3035bea84b4f817680/output_reverse_paired.fq | |
| May-10 16:51:08.350 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ea/481dcd903d6217163899602a70ecb2/output_forward_paired.fq | |
| May-10 16:51:08.350 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/42/28056a7d8bb6ef5f4447364d13d39b/output_reverse_paired.fq | |
| May-10 16:51:08.351 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ea/481dcd903d6217163899602a70ecb2/output_forward_paired.fq | |
| May-10 16:51:08.351 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/42/28056a7d8bb6ef5f4447364d13d39b/output_reverse_paired.fq | |
| May-10 16:51:08.351 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/8b0ee8069a29cd5707fa9f2b539fcf/output_forward_paired.fq | |
| May-10 16:51:08.351 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c8/a995254f01f10b0566da7413c51077/output_reverse_paired.fq | |
| May-10 16:51:08.351 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/8b0ee8069a29cd5707fa9f2b539fcf/output_forward_paired.fq | |
| May-10 16:51:08.351 [Actor Thread 32] INFO nextflow.processor.TaskProcessor - [b3/46923e] Cached process > mapping (Deste_080.P3_TGACCA.004) | |
| May-10 16:51:08.352 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c8/a995254f01f10b0566da7413c51077/output_reverse_paired.fq | |
| May-10 16:51:08.352 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/42d5df37bc07d58a492a752f9696a8/output_forward_paired.fq | |
| May-10 16:51:08.352 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [fd/bf4563] Cached process > mapping (Deste_080.P3_TGACCA.004) | |
| May-10 16:51:08.352 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [05/5f206f] Cached process > mapping (Deste_080.P3_TGACCA.004) | |
| May-10 16:51:08.352 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ab/38f3d137d8dd1a599b2d9dd923d191/output_reverse_paired.fq | |
| May-10 16:51:08.352 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [f2/dca3d6] Cached process > mapping (Bari3_106D.P1_TGACCA.004) | |
| May-10 16:51:08.352 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/42d5df37bc07d58a492a752f9696a8/output_forward_paired.fq | |
| May-10 16:51:08.352 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ab/38f3d137d8dd1a599b2d9dd923d191/output_reverse_paired.fq | |
| May-10 16:51:08.352 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2c/78ba6b4c2bbb678c19cb2421c16faa/output_forward_paired.fq | |
| May-10 16:51:08.353 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d6759043401cf02e6f741f50b25419/output_reverse_paired.fq | |
| May-10 16:51:08.353 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2c/78ba6b4c2bbb678c19cb2421c16faa/output_forward_paired.fq | |
| May-10 16:51:08.353 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0a/d6759043401cf02e6f741f50b25419/output_reverse_paired.fq | |
| May-10 16:51:08.353 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/cc/68f8eb07337dc4254175f076863476/output_forward_paired.fq | |
| May-10 16:51:08.353 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/cc/68f8eb07337dc4254175f076863476/output_forward_paired.fq | |
| May-10 16:51:08.353 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ae/f447efcd2388a69aaa23a024b3ba60/output_reverse_paired.fq | |
| May-10 16:51:08.354 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/35c61dfcf05f6c23b929867ceb81ec/output_forward_paired.fq | |
| May-10 16:51:08.354 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ae/f447efcd2388a69aaa23a024b3ba60/output_reverse_paired.fq | |
| May-10 16:51:08.354 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/2d/35c61dfcf05f6c23b929867ceb81ec/output_forward_paired.fq | |
| May-10 16:51:08.354 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8a/35084818a03b2f7bcd36325b3cc988/output_reverse_paired.fq | |
| May-10 16:51:08.354 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/55/ea88c448d386be2727efbd1fc70bdf/output_forward_paired.fq | |
| May-10 16:51:08.355 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/8a/35084818a03b2f7bcd36325b3cc988/output_reverse_paired.fq | |
| May-10 16:51:08.355 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/55/ea88c448d386be2727efbd1fc70bdf/output_forward_paired.fq | |
| May-10 16:51:08.355 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/b728cfcd97a9e28edce545c7db06fc/output_reverse_paired.fq | |
| May-10 16:51:08.355 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0d/e74e13f45613d14ddb8a97513445d4/output_forward_paired.fq | |
| May-10 16:51:08.355 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/b728cfcd97a9e28edce545c7db06fc/output_reverse_paired.fq | |
| May-10 16:51:08.355 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/0d/e74e13f45613d14ddb8a97513445d4/output_forward_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/06/8e85ad7a1221f66e862ac5ae51f1ec/output_forward_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7a/471ed1154b2ff05229e1d0b7ea3be9/output_reverse_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/06/8e85ad7a1221f66e862ac5ae51f1ec/output_forward_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/7a/471ed1154b2ff05229e1d0b7ea3be9/output_reverse_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [bf/021fe6] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.356 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b3/eb3a9e24ca075b2bdff4c907dd5a2d/output_forward_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/69/599ff2d771ba08de700b57d97475b8/output_reverse_paired.fq | |
| May-10 16:51:08.356 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b3/eb3a9e24ca075b2bdff4c907dd5a2d/output_forward_paired.fq | |
| May-10 16:51:08.357 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/69/599ff2d771ba08de700b57d97475b8/output_reverse_paired.fq | |
| May-10 16:51:08.357 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3d/bf0441ff993f6ab18736f3bf60b44d/output_forward_paired.fq | |
| May-10 16:51:08.357 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/3d/bf0441ff993f6ab18736f3bf60b44d/output_forward_paired.fq | |
| May-10 16:51:08.357 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/eb/bef9263a6db253ab11cda07555a767/output_reverse_paired.fq | |
| May-10 16:51:08.357 [Actor Thread 7] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/e55a7a4d1b90df1cf21101009d5e3c/output_forward_paired.fq | |
| May-10 16:51:08.358 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/eb/bef9263a6db253ab11cda07555a767/output_reverse_paired.fq | |
| May-10 16:51:08.358 [Actor Thread 7] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/de/e55a7a4d1b90df1cf21101009d5e3c/output_forward_paired.fq | |
| May-10 16:51:08.358 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/78/dbea2c5e232183a3edef679c586f04/output_reverse_paired.fq | |
| May-10 16:51:08.358 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/78/dbea2c5e232183a3edef679c586f04/output_reverse_paired.fq | |
| May-10 16:51:08.359 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/4698fbd129c79b6f65541adb2eef1b/output_reverse_paired.fq | |
| May-10 16:51:08.359 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/c4/4698fbd129c79b6f65541adb2eef1b/output_reverse_paired.fq | |
| May-10 16:51:08.359 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9d/50966746c185d4f0b189bb136ab6c3/output_reverse_paired.fq | |
| May-10 16:51:08.360 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/9d/50966746c185d4f0b189bb136ab6c3/output_reverse_paired.fq | |
| May-10 16:51:08.360 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [68/43bba3] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.360 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d5/87127f3395fc704dd5456a375f67e5/output_reverse_paired.fq | |
| May-10 16:51:08.360 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d5/87127f3395fc704dd5456a375f67e5/output_reverse_paired.fq | |
| May-10 16:51:08.361 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <trimming> Sending poison pills and terminating process | |
| May-10 16:51:08.361 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/08/eeefdc5788250d5171abf27c83e86e/output_reverse_paired.fq | |
| May-10 16:51:08.361 [Actor Thread 13] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/34ff3384d930020509fd48b83e5b4e/output_forward_paired.fq | |
| May-10 16:51:08.361 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/08/eeefdc5788250d5171abf27c83e86e/output_reverse_paired.fq | |
| May-10 16:51:08.361 [Actor Thread 2] DEBUG nextflow.Session - <<< barrier arrive (process: trimming) | |
| May-10 16:51:08.361 [Actor Thread 13] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/12/34ff3384d930020509fd48b83e5b4e/output_forward_paired.fq | |
| May-10 16:51:08.362 [Actor Thread 8] DEBUG n.processor.ParallelTaskProcessor - <trimming> After stop | |
| May-10 16:51:08.362 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/49/2ee70c5a99927655ffe2de9091c0ce/output_reverse_paired.fq | |
| May-10 16:51:08.363 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [6f/3b704f] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.363 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [16/ebce9e] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.363 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/49/2ee70c5a99927655ffe2de9091c0ce/output_reverse_paired.fq | |
| May-10 16:51:08.364 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [02/d658cc] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.364 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [b7/1d5f81] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.366 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [bf/5f6dbc] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.366 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [d5/f581cd] Cached process > mapping (Bari3_072C.P1_CGATGT.001) | |
| May-10 16:51:08.366 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [7a/310176] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.367 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [24/d50bfb] Cached process > mapping (Bari3_072C.P1_CGATGT.001) | |
| May-10 16:51:08.367 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [18/af07bf] Cached process > mapping (CDCCorinne.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.367 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b8/c19fdb3dd5ccbbac713c1c6ea0531c/output_reverse_paired.fq | |
| May-10 16:51:08.368 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [31/58c1b4] Cached process > mapping (Bari3_072C.P1_CGATGT.001) | |
| May-10 16:51:08.368 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [d4/44c727] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.368 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [24/86dbdd] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.369 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [95/52ea79] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.371 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/b8/c19fdb3dd5ccbbac713c1c6ea0531c/output_reverse_paired.fq | |
| May-10 16:51:08.371 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [9d/f1950d] Cached process > mapping (Ortan_066.P1_TAGCTT.001) | |
| May-10 16:51:08.371 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [83/7ebc18] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.371 [Actor Thread 30] INFO nextflow.processor.TaskProcessor - [eb/6e6ed1] Cached process > mapping (CDC512-51.120515_SN822_0160_BC0JK7ACXX_L5.001) | |
| May-10 16:51:08.372 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/97/f42fa122516625d4e49b83c3e3a5d7/output_reverse_paired.fq | |
| May-10 16:51:08.373 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/97/f42fa122516625d4e49b83c3e3a5d7/output_reverse_paired.fq | |
| May-10 16:51:08.373 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/43/8c92c22362b0aa7a87705bfdf83c13/output_reverse_paired.fq | |
| May-10 16:51:08.373 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/43/8c92c22362b0aa7a87705bfdf83c13/output_reverse_paired.fq | |
| May-10 16:51:08.374 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/98/9212dd4e73cb7d2abe3112fe1f7898/output_reverse_paired.fq | |
| May-10 16:51:08.374 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/98/9212dd4e73cb7d2abe3112fe1f7898/output_reverse_paired.fq | |
| May-10 16:51:08.374 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/72de8e81f0685520c9d108b2b4ef84/output_reverse_paired.fq | |
| May-10 16:51:08.374 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [f1/550960] Cached process > mapping (Ortan_066.P1_TAGCTT.001) | |
| May-10 16:51:08.374 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/ac/72de8e81f0685520c9d108b2b4ef84/output_reverse_paired.fq | |
| May-10 16:51:08.374 [Actor Thread 29] DEBUG n.splitter.AbstractTextSplitter - Splitter `splitFastq` collector path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a0/1609ddfb474e008ed6eff2bf63a60e/output_reverse_paired.fq | |
| May-10 16:51:08.375 [Actor Thread 29] DEBUG nextflow.splitter.AbstractSplitter - Operator `splitFastq` reusing cached chunks at path: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/a0/1609ddfb474e008ed6eff2bf63a60e/output_reverse_paired.fq | |
| May-10 16:51:08.375 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [9c/437879] Cached process > mapping (Bari3_106D.P1_TGACCA.003) | |
| May-10 16:51:08.375 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [3c/83d446] Cached process > mapping (Bari3_106D.P1_TGACCA.003) | |
| May-10 16:51:08.378 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [12/e9dd84] Cached process > mapping (Bari3_072C.P1_CGATGT.005) | |
| May-10 16:51:08.380 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [bf/15ff45] Cached process > mapping (Bari3_106D.P1_TGACCA.003) | |
| May-10 16:51:08.382 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [bb/95076c] Cached process > mapping (Cermi_075.P1_TTAGGC.005) | |
| May-10 16:51:08.382 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [3b/d3a41e] Cached process > mapping (Cermi_075.P1_TTAGGC.005) | |
| May-10 16:51:08.379 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [76/e31653] Cached process > mapping (Bari3_072C.P1_CGATGT.005) | |
| May-10 16:51:08.382 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [4c/6247d3] Cached process > mapping (Cermi_075.P1_TTAGGC.005) | |
| May-10 16:51:08.382 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [98/635eec] Cached process > mapping (Cermi_075.P1_TTAGGC.005) | |
| May-10 16:51:08.383 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [fe/71b678] Cached process > mapping (Bari3_100.P3_TTAGGC.002) | |
| May-10 16:51:08.384 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [30/03f1d1] Cached process > mapping (Gunas_062.P3_ACAGTG.002) | |
| May-10 16:51:08.385 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [48/9c1e91] Cached process > mapping (Gunas_062.P3_ACAGTG.002) | |
| May-10 16:51:08.386 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [fe/598fff] Cached process > mapping (Gunas_062.P3_ACAGTG.002) | |
| May-10 16:51:08.387 [Actor Thread 31] INFO nextflow.processor.TaskProcessor - [73/1f42f1] Cached process > mapping (Bari3_100.P3_TTAGGC.002) | |
| May-10 16:51:08.388 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [73/210dc0] Cached process > mapping (Gunas_062.P3_ACAGTG.005) | |
| May-10 16:51:08.408 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [52/eb496b] Cached process > mapping (Cermi_075.P1_TTAGGC.001) | |
| May-10 16:51:08.489 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [d3/094042] Submitted process > mapping (Bari3_072C.P1_CGATGT.005) | |
| May-10 16:51:08.498 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [86/907137] Submitted process > mapping (Ortan_066.P1_TAGCTT.002) | |
| May-10 16:51:08.509 [Actor Thread 21] DEBUG n.daemon.CustomStealingCollisionSpi - Computing resources for node: `localhost` [master] > cpus: 12; mem: 31.3 GB; free disk: 73.4 GB (/tmp) | |
| May-10 16:51:08.512 [Actor Thread 21] INFO nextflow.processor.TaskDispatcher - [47/2afd1a] Submitted process > mapping (Ortan_066.P1_TAGCTT.002) | |
| May-10 16:51:08.516 [Actor Thread 29] INFO nextflow.processor.TaskDispatcher - [b7/89edba] Submitted process > mapping (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.520 [Actor Thread 30] INFO nextflow.processor.TaskDispatcher - [95/1b673f] Submitted process > mapping (Gunas_062.P3_ACAGTG.002) | |
| May-10 16:51:08.523 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [44/fb97a0] Cached process > mapping (Cermi_075.P1_TTAGGC.002) | |
| May-10 16:51:08.524 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [06/c4f766] Submitted process > mapping (Gunas_062.P3_ACAGTG.005) | |
| May-10 16:51:08.526 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [f8/c7cf51] Cached process > mapping (Cermi_075.P1_TTAGGC.002) | |
| May-10 16:51:08.529 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [e5/e5b836] Submitted process > mapping (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.534 [Actor Thread 1] INFO nextflow.processor.TaskDispatcher - [55/23db9d] Submitted process > mapping (Gunas_062.P3_ACAGTG.005) | |
| May-10 16:51:08.535 [pub-#7%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Ortan_066.P1_TAGCTT.002) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/47/2afd1a198392fb60fe5117f5759375 - remote: false | |
| May-10 16:51:08.535 [pub-#8%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Gunas_062.P3_ACAGTG.005) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/06/c4f7660f4f865dca1c41a890e010c8 - remote: false | |
| May-10 16:51:08.536 [pub-#9%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Gunas_062.P3_ACAGTG.005) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/55/23db9d4d66daef6491a97b94cac0f4 - remote: false | |
| May-10 16:51:08.538 [Actor Thread 31] INFO nextflow.processor.TaskDispatcher - [23/0764b8] Submitted process > mapping (Cermi_075.P1_TTAGGC.001) | |
| May-10 16:51:08.541 [pub-#10%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Cermi_075.P1_TTAGGC.001) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/23/0764b8e1764cd4a5a4fed593749092 - remote: false | |
| May-10 16:51:08.545 [pub-#11%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Cermi_075.P1_TTAGGC.001) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/cf/dfb9b4aa5ee501b2895572000b3a72 - remote: false | |
| May-10 16:51:08.546 [Actor Thread 19] INFO nextflow.processor.TaskDispatcher - [8f/0a9040] Submitted process > mapping (Cermi_075.P1_TTAGGC.001) | |
| May-10 16:51:08.550 [Actor Thread 10] INFO nextflow.processor.TaskDispatcher - [7c/cdaab8] Submitted process > mapping (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.553 [Actor Thread 24] INFO nextflow.processor.TaskDispatcher - [cf/dfb9b4] Submitted process > mapping (Cermi_075.P1_TTAGGC.001) | |
| May-10 16:51:08.555 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [eb/13e701] Submitted process > mapping (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.557 [pub-#12%nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: mapping (Ortan_066.P5_TAGCTT.001) - workdir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/eb/13e7010dd87ae021df71939703abdb - remote: false | |
| May-10 16:51:08.559 [Actor Thread 21] INFO nextflow.processor.TaskDispatcher - [e3/00d02d] Submitted process > mapping (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.562 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [02/db0dcc] Submitted process > mapping (Ortan_066.P5_TAGCTT.001) | |
| May-10 16:51:08.566 [Actor Thread 1] INFO nextflow.processor.TaskProcessor - [32/6a9845] Cached process > mapping (Bari3_100.P3_TTAGGC.001) | |
| May-10 16:51:08.567 [Actor Thread 30] INFO nextflow.processor.TaskDispatcher - [94/8aa858] Submitted process > mapping (Cermi_075.P1_TTAGGC.002) | |
| May-10 16:51:08.568 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [63/b3eccc] Cached process > mapping (Bari3_100.P3_TTAGGC.001) | |
| May-10 16:51:08.569 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [5a/2b1c60] Cached process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.570 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [f1/2e1eea] Submitted process > mapping (Ortan_066.P1_TAGCTT.005) | |
| May-10 16:51:08.575 [Actor Thread 7] INFO nextflow.processor.TaskDispatcher - [40/3fc0d7] Submitted process > mapping (Cermi_075.P1_TTAGGC.002) | |
| May-10 16:51:08.585 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [96/7d1dd9] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.601 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [5d/f28f28] Cached process > mapping (Gunas_062.P3_ACAGTG.003) | |
| May-10 16:51:08.602 [Actor Thread 10] INFO nextflow.processor.TaskDispatcher - [72/248d57] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.619 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [84/39f5d0] Submitted process > mapping (Ortan_066.P1_TAGCTT.005) | |
| May-10 16:51:08.628 [Actor Thread 33] INFO nextflow.processor.TaskProcessor - [96/8246fe] Cached process > mapping (Gunas_062.P3_ACAGTG.003) | |
| May-10 16:51:08.632 [Actor Thread 31] INFO nextflow.processor.TaskDispatcher - [23/a484b9] Submitted process > mapping (Ortan_066.P1_TAGCTT.003) | |
| May-10 16:51:08.636 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [97/20a2f3] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.636 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [5f/5718ae] Submitted process > mapping (Ortan_066.P1_TAGCTT.003) | |
| May-10 16:51:08.640 [Actor Thread 24] INFO nextflow.processor.TaskDispatcher - [1e/d54aca] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.643 [Actor Thread 19] INFO nextflow.processor.TaskDispatcher - [d2/a99a12] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.650 [Actor Thread 10] INFO nextflow.processor.TaskDispatcher - [63/a3cd6f] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002) | |
| May-10 16:51:08.653 [Actor Thread 1] INFO nextflow.processor.TaskDispatcher - [87/98ac73] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.660 [Actor Thread 7] INFO nextflow.processor.TaskDispatcher - [20/64e542] Submitted process > mapping (Gunas_062.P3_ACAGTG.003) | |
| May-10 16:51:08.662 [Actor Thread 33] INFO nextflow.processor.TaskDispatcher - [89/5daf21] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002) | |
| May-10 16:51:08.665 [Actor Thread 31] INFO nextflow.processor.TaskDispatcher - [fc/66d10d] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002) | |
| May-10 16:51:08.667 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [3a/0371ba] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002) | |
| May-10 16:51:08.670 [Actor Thread 30] INFO nextflow.processor.TaskDispatcher - [e9/3269bc] Submitted process > mapping (CDCVanguard.120614_SN822_0162_BC0KAGACXX_L8.001) | |
| May-10 16:51:08.673 [Actor Thread 18] INFO nextflow.processor.TaskDispatcher - [c2/34a0ee] Submitted process > mapping (Bari2_072n2.P7_CGATGT.002) | |
| May-10 16:52:07.538 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=96c7d4b0, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.1%, avg=2.16%, GC=0%] | |
| ^-- Heap [used=324MB, free=95.45%, comm=784MB] | |
| ^-- Public thread pool [active=6, idle=18, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:53:07.540 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=96c7d4b0, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.07%, avg=1.17%, GC=0%] | |
| ^-- Heap [used=332MB, free=95.34%, comm=784MB] | |
| ^-- Public thread pool [active=6, idle=18, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:54:07.543 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=96c7d4b0, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.03%, avg=0.83%, GC=0%] | |
| ^-- Heap [used=338MB, free=95.26%, comm=784MB] | |
| ^-- Public thread pool [active=6, idle=18, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:55:07.549 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=96c7d4b0, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.03%, avg=0.7%, GC=0%] | |
| ^-- Heap [used=354MB, free=95.03%, comm=784MB] | |
| ^-- Public thread pool [active=6, idle=18, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:55:59.978 [Thread-2] DEBUG n.processor.TaskPollingMonitor - !! executor ignite > tasks to be completed: 34 -- first: TaskHandler[id: 114; name: mapping (Bari3_072C.P1_CGATGT.005); status: SUBMITTED; exit: -; workDir: /ppgdata/notebooks/robsyme/org/projects/2015-12-16-Chickpea_genome/03-freebayes/work/d3/094042884f88bfe45ed351248a6141] |
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| May-10 16:50:27.908 [main] DEBUG nextflow.cli.Launcher - $> /home/robsyme/bin/nextflow node | |
| May-10 16:50:28.178 [main] INFO nextflow.daemon.IgDaemon - Configuring Apache Ignite cluster daemon | |
| May-10 16:50:28.187 [main] DEBUG nextflow.daemon.IgGridFactory - Configuration properties for role: 'worker' -- [:] | |
| May-10 16:50:28.249 [main] DEBUG nextflow.daemon.IgGridFactory - Apache Ignite config > group name: nextflow | |
| May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Config URL: n/a | |
| May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Daemon mode: off | |
| May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS: Linux 4.4.0-21-generic amd64 | |
| May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS user: robsyme | |
| May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Language runtime: Groovy | |
| May-10 16:50:28.329 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM information: OpenJDK Runtime Environment 1.8.0_91-8u91-b14-0ubuntu4~16.04.1-b14 Oracle Corporation OpenJDK 64-Bit Server VM 25.91-b14 | |
| May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM total memory: 3.5GB | |
| May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Remote Management [restart: off, REST: on, JMX (remote: off)] | |
| May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - IGNITE_HOME=null | |
| May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM arguments: [-Xverify:none, -Djava.library.path=/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib, -Dcapsule.app=nextflow_0.18.3, -Djava.awt.headless=true, -Dcapsule.jar=/home/robsyme/.nextflow/framework/0.18.3/nextflow-0.18.3-one.jar] | |
| May-10 16:50:28.330 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Configured caches ['ignite-marshaller-sys-cache', 'ignite-sys-cache', 'ignite-atomics-sys-cache', 'allSessions', 'igfs-data', 'igfs-meta'] | |
| May-10 16:50:28.333 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Local node user attribute [ROLE=worker] | |
| May-10 16:50:28.333 [pub-#5%nextflow%] WARN o.a.ignite.internal.GridDiagnostic - Initial heap size is 250MB (should be no less than 512MB, use -Xms512m -Xmx512m). | |
| May-10 16:50:28.365 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Non-loopback local IPs: 134.7.56.24, fe80:0:0:0:6600:6aff:fe4e:5c67%enp0s25 | |
| May-10 16:50:28.365 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Enabled local MACs: 64006A4E5C67 | |
| May-10 16:50:28.373 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - Configured plugins: | |
| May-10 16:50:28.373 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - ^-- None | |
| May-10 16:50:28.373 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - | |
| May-10 16:50:28.418 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - IPC shared memory server endpoint started [port=48100, tokDir=/tmp/ignite/ipc/shmem/b559d768-45e2-45c8-b22b-4a352d4e6ea1-26197] | |
| May-10 16:50:28.419 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound shared memory communication to TCP port [port=48100, locHost=0.0.0.0/0.0.0.0] | |
| May-10 16:50:28.428 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound to TCP port [port=47100, locHost=0.0.0.0/0.0.0.0] | |
| May-10 16:50:28.439 [main] WARN o.a.i.s.c.noop.NoopCheckpointSpi - Checkpoints are disabled (to enable configure any GridCheckpointSpi implementation) | |
| May-10 16:50:28.451 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Registered SPI MBean: org.apache:clsLdr=74a14482,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi | |
| May-10 16:50:28.451 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI started ok [startMs=0, spiMBean=org.apache:clsLdr=74a14482,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi] | |
| May-10 16:50:28.453 [main] WARN o.a.i.s.s.noop.NoopSwapSpaceSpi - Swap space is disabled. To enable use FileSwapSpaceSpi. | |
| May-10 16:50:28.454 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Security status [authentication=off, tls/ssl=off] | |
| May-10 16:50:28.607 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully started [name=TCP binary, host=0.0.0.0/0.0.0.0, port=11211] | |
| May-10 16:50:28.630 [main] INFO o.a.i.i.u.i.s.IpcSharedMemoryServerEndpoint - IPC shared memory server endpoint started [port=10500, tokDir=/tmp/ignite/ipc/shmem/b559d768-45e2-45c8-b22b-4a352d4e6ea1-26197] | |
| May-10 16:50:28.631 [main] INFO o.a.i.i.u.i.l.IpcServerTcpEndpoint - IPC server loopback endpoint started [port=11400] | |
| May-10 16:50:28.648 [main] INFO o.a.i.s.d.tcp.TcpDiscoverySpi - Successfully bound to TCP port [port=47500, localHost=0.0.0.0/0.0.0.0] | |
| May-10 16:50:28.652 [main] WARN o.a.i.s.d.t.i.m.TcpDiscoveryMulticastIpFinder - TcpDiscoveryMulticastIpFinder has no pre-configured addresses (it is recommended in production to specify at least one address in TcpDiscoveryMulticastIpFinder.getAddresses() configuration property) | |
| May-10 16:50:29.880 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FINISHED | |
| May-10 16:50:29.881 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FAILED | |
| May-10 16:50:29.881 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: JOB_MAPPED | |
| May-10 16:50:29.975 [main] WARN o.a.i.i.p.c.GridCacheEvictionManager - <igfs-data> Evictions are not synchronized with other nodes in topology which provides 2x-3x better performance but may cause data inconsistency if cache store is not configured (consider changing 'evictSynchronized' configuration property). | |
| May-10 16:50:30.002 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-data, mode=PARTITIONED] | |
| May-10 16:50:30.006 [main] WARN o.a.i.i.p.cache.GridCacheProcessor - Eviction policy not enabled with ONHEAP_TIERED mode for cache (entries will not be moved to off-heap store): allSessions | |
| May-10 16:50:30.044 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=allSessions, mode=PARTITIONED] | |
| May-10 16:50:30.045 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-sys-cache, mode=REPLICATED] | |
| May-10 16:50:30.047 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-atomics-sys-cache, mode=PARTITIONED] | |
| May-10 16:50:30.049 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-meta, mode=REPLICATED] | |
| May-10 16:50:30.050 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-marshaller-sys-cache, mode=REPLICATED] | |
| May-10 16:50:30.162 [exchange-worker-#69%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Skipping rebalancing (nothing scheduled) [top=AffinityTopologyVersion [topVer=1, minorTopVer=0], evt=NODE_JOINED, node=b559d768-45e2-45c8-b22b-4a352d4e6ea1] | |
| May-10 16:50:30.197 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Performance suggestions for grid 'nextflow' (fix if possible) | |
| May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To disable, set -DIGNITE_PERFORMANCE_SUGGESTIONS_DISABLED=true | |
| May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - ^-- Disable collision resolution (remove 'collisionSpi' from configuration) | |
| May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To start Console Management & Monitoring run ignitevisorcmd.{sh|bat} | |
| May-10 16:50:30.198 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| May-10 16:50:30.199 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| >>> +----------------------------------------------------------------------------+ | |
| >>> Ignite ver. 1.5.0-final#20151229-sha1:f1f8cda2f3f62231f42a59951bf34c39577c1bec | |
| >>> +----------------------------------------------------------------------------+ | |
| >>> OS name: Linux 4.4.0-21-generic amd64 | |
| >>> CPU(s): 12 | |
| >>> Heap: 3.5GB | |
| >>> VM name: 26197@pisum | |
| >>> Grid name: nextflow | |
| >>> Local node [ID=B559D768-45E2-45C8-B22B-4A352D4E6EA1, order=1, clientMode=false] | |
| >>> Local node addresses: [134.7.56.24/0:0:0:0:0:0:0:1%lo, /127.0.0.1, /134.7.56.24] | |
| >>> Local ports: TCP:10500 TCP:11211 TCP:11400 TCP:47100 UDP:47400 TCP:47500 TCP:48100 | |
| May-10 16:50:30.200 [main] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=1, servers=1, clients=0, CPUs=12, heap=3.5GB] | |
| May-10 16:50:30.201 [main] DEBUG nextflow.daemon.IgDaemon - Configuring Apache Ignite file system | |
| May-10 16:50:30.209 [disco-event-worker-#66%nextflow%] DEBUG n.daemon.CustomStealingCollisionSpi - Computing resources for node: `localhost` [worker] > cpus: 12; mem: 15.6 GB; free disk: 182.8 GB (/tmp) | |
| May-10 16:50:30.217 [main] DEBUG nextflow.file.FileHelper - Creating a file system instance for provider: IgFileSystemProvider | |
| May-10 16:51:06.797 [disco-event-worker-#66%nextflow%] INFO o.a.i.i.m.d.GridDiscoveryManager - Added new node to topology: TcpDiscoveryNode [id=96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e, addrs=[0:0:0:0:0:0:0:1%lo, 127.0.0.1, 134.7.57.219, 172.17.0.1], sockAddrs=[/172.17.0.1:47500, /0:0:0:0:0:0:0:1%lo:47500, /134.7.57.219:47500, /127.0.0.1:47500, /134.7.57.219:47500, /172.17.0.1:47500], discPort=47500, order=2, intOrder=2, lastExchangeTime=1462870256654, loc=false, ver=1.5.0#20 | |
| May-10 16:51:06.797 [disco-event-worker-#66%nextflow%] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=2, servers=2, clients=0, CPUs=24, heap=10.0GB] | |
| May-10 16:51:07.332 [exchange-worker-#69%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Skipping rebalancing (nothing scheduled) [top=AffinityTopologyVersion [topVer=2, minorTopVer=0], evt=NODE_JOINED, node=96c7d4b0-dc9b-4a9d-9a50-1b87bd4c512e] | |
| May-10 16:51:30.205 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=b559d768, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.17%, avg=0.59%, GC=0%] | |
| ^-- Heap [used=212MB, free=94.02%, comm=484MB] | |
| ^-- Public thread pool [active=0, idle=24, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:52:30.203 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=b559d768, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.13%, avg=0.38%, GC=0%] | |
| ^-- Heap [used=221MB, free=93.76%, comm=484MB] | |
| ^-- Public thread pool [active=0, idle=24, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:53:30.211 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=b559d768, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.1%, avg=0.3%, GC=0%] | |
| ^-- Heap [used=228MB, free=93.56%, comm=484MB] | |
| ^-- Public thread pool [active=0, idle=24, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] | |
| May-10 16:54:30.209 [grid-timeout-worker-#49%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
| Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
| ^-- Node [id=b559d768, name=nextflow] | |
| ^-- H/N/C [hosts=2, nodes=2, CPUs=24] | |
| ^-- CPU [cur=0.13%, avg=0.26%, GC=0%] | |
| ^-- Heap [used=235MB, free=93.37%, comm=484MB] | |
| ^-- Public thread pool [active=0, idle=24, qSize=0] | |
| ^-- System thread pool [active=0, idle=24, qSize=0] | |
| ^-- Outbound messages queue [size=0] |
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