roomrys

# %%
import random
import cv2
import pandas as pd
import matplotlib.pyplot as plt
import numpy as np

# %%
def read_intensities(video_path: str):
    # Open the video file

roomrys

import csv
import sys
from pathlib import Path
from typing import List

try:
    from tqdm import tqdm
except ImportError:
    print("Cannot import tqdm. Progress bar will not be displayed.")
    tqdm = lambda x: x

roomrys

import logging
import os
from typing import Optional

import sleap
from sleap.gui.app import main as sleap_label


logger = logging.getLogger(__name__)
logger.setLevel(logging.INFO)

roomrys

import logging

import sleap
from sleap.io.video import MediaVideo

logger = logging.getLogger(__name__)


def main(path_pkg_slp, paths_to_videos, output_slp_path="slp_from_package.slp"):
    """Replace HDF5 backend with MediaVideo backend for videos in package.

roomrys

import logging
import subprocess
from pathlib import Path

logger = logging.getLogger(__name__)

file_path = Path(__file__).resolve()
git_dir = Path(
    subprocess.check_output(
        ["git", "rev-parse", "--git-dir"], cwd=file_path.parent.as_posix()

roomrys

from pathlib import Path

import pandas as pd
import sleap
from sleap import Labels


def main(
    ds: str, num_instances_expected: int = 8, output_csv: str = "missing_instances.csv"
) -> None:

roomrys

import colorsys

import matplotlib
import matplotlib.colors as mcolors
import matplotlib.patches as mpatches
import matplotlib.pyplot as plt
import numpy as np
from itertools import permutations
from typing import Callable, Dict, Iterator, List, Optional, Tuple, Union

roomrys

import logging
import math
import matplotlib.pyplot as plt
import matplotlib.ticker as ticker
import numpy as np
from typing import List, Tuple

# Set up logging
logger = logging.getLogger(__name__)
logger.setLevel(logging.DEBUG)

roomrys

"""This module defines functions to evaluate metrics on a per video basis."""

from pathlib import Path
from typing import Optional

import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns

roomrys

"""This module requires having gcloud authenticated and the google-cloud-compute library."""

from __future__ import annotations

import re
import sys
from typing import Any
import warnings

from google.api_core.extended_operation import ExtendedOperation