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rossmounce
/ 172 two & three letter genus names
Created
September 19, 2015 15:11
List of two or three letter genus names, thanks to Paul Kirk [TAXACOM] http://mailman.nhm.ku.edu/pipermail/taxacom/2007-January/061176.html
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| Aa | |
| Ada | |
| Age | |
| Aha | |
| Aix | |
| Aka | |
| Ala | |
| Anx | |
| Aon | |
| Ara |
rossmounce
/ 100 botanical gardens
Created
November 7, 2015 10:51
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| 4334;Abbotsbury Subtropical Gardens;Bullers Way;Abbotsbury;Weymouth;Dorset;;United Kingdom;50.662224;-2.629523 | |
| 4888;Abby Aldrich Rockefeller Garden;Private;;Seal Harbor;Maine;04675;United States of America;44.303333;-68.240278 | |
| 4426;Abkhazi Garden;1964 Fairfield Road;;Victoria;British Columbia;V8S 1H4;Canada;48.415687;-123.32619 | |
| 5062;ABQ BioPark;2601 Central NW;;Albuquerque;New Mexico;87104;United States of America;35.093028;-106.679323 | |
| 4921;Abubakar Tafawa Balewa University Garden;Ran Road;;;Bauchi;;Nigeria;10.32736;9.84636 | |
| 3331;Abuja Gardens;;;Abuja;Abuja;;Nigeria;9.0580;7.4890 | |
| 1246;Aburi Botanic Gardens;PO Box 23, ABURI, Akwiapim, Ghana.;P.O.Box M169 Accra Ghana;Aburi;;;Ghana;5.8469;-0.1755 | |
| 53;Acharya Jagadish Chandra Bose Indian Botanic Garden;Botanical Survey of India;Shibpur;Howrah;West Bengal;711 103;India;22.6507;88.2658 | |
| 757;Adam Mickiewicz University Botanical Garden in Poznań;Dąbrowskiego 165, 60-594 POZNAŃ, Poland.;;Poznań;;;Poland;52.4063;16.9251 | |
| 1233;Adkins Arboretum;12610 Eveland Road;;Ridgely; |
rossmounce
/ wordles.r
Last active
December 10, 2015 13:58
— forked from sckott/beswordles.r
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| #N.B. On *ubuntu RCurl may not install for you off the bat. If so read: http://www.omegahat.org/RCurl/FAQ.html & sudo apt-get install libcurl4-openssl-dev | |
| install.packages(c("RCurl","twitteR","wordcloud","tm","stringr")) | |
| library(twitteR); library(wordcloud); library(tm); library(stringr); | |
| # Search for #mooc tweets | |
| mooctweets <- searchTwitter("#mooc", n=2000) | |
| length(mooctweets) # ends up with 713 as of 03-Jan-13 at 15:42 London time | |
| # make into a data.frame | |
| mooctweets_df <- twListToDF(mooctweets) |
rossmounce
/ grep_references.sh
Last active
December 20, 2015 09:58
A grep command for all the different Reference List headings encountered in just two years worth of Zootaxa articles. Some post-publication standardization needed me thinks!
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| egrep "(^Citations$|Cited Literature$|Literature [cC]ited$|Literatures cited$|Literature Cited\:$|References$|^references$|Refrences$|References [cC]ited$|REFERENCES$|Bibliography$|BIBLIOGRAPHY$|LITERATURE CITED$|LITERATURE cited$|REFERENCES CITED$|References \[not in Zootaxa format\]$|^Reference$|^Literature$|^References \(asterisks|^References \(except original descriptions|Litterature cited$|Literture Cited$)" |
rossmounce
/ Trees2Trees
Created
August 12, 2013 16:59
A _really_ basic script for doing many-to-many tree2tree distance (RF) comparisons in R, using the phangorn package and the function treedist. I should probably use one of the 'apply' functions here, right?
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| library(phangorn) | |
| #264 REFERENCE trees in phylip format, PAUP numbering hence 2 | |
| ref2 <- read.tree("jackr2.tre") | |
| #264 trees in phylip format to pair-wise compare to the reference trees, TNT numbering hence 1 | |
| tr2 <- read.tree("jack1.tre") | |
| x <- {} | |
| #all reference trees to one comp tree | |
| for (i in 1:length(tr2)) { |
rossmounce
/ two-large-nonbinary-trees
Created
December 21, 2015 15:29
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| (Psychromonas_antarctica,((((Escherichia_coli,(Klebsiella_pneumoniae,Klebsiella_variicola,Klebsiella_oxytoca,Klebsiella_granulomatis),(Serratia_marcescens,Serratia_entomophila,Serratia_ficaria,Serratia_fonticola,Serratia_plymuthica,Serratia_rubidaea,Serratia_liquefaciens),Kluyvera_ascorbata,(Raoultella_ornithinolytica,Raoultella_planticola,Raoultella_terrigena),Brenneria_salicis,Kosakonia_cowanii,Pluralibacter_pyrinus,Pantoea_agglomerans,(Enterobacter_aerogenes,(Enterobacter_cancerogenus,Enterobacter_asburiae),Enterobacter_mori),(Lelliottia_amnigena,Lelliottia_nimipressuralis),(Citrobacter_gillenii,Citrobacter_freundii),Obesumbacterium_proteus,Yersinia_pestis,Cedecea_davisae,Salmonella_enterica,(Dickeya_chrysanthemi,Dickeya_dadantii),Plesiomonas_shigelloides),((Vibrio_proteolyticus,Vibrio_neptunius,Vibrio_coralliilyticus,Vibrio_cholerae,Vibrio_agarivorans,Vibrio_diazotrophicus,Vibrio_vulnificus,Vibrio_gazogenes,Vibrio_alginolyticus),(Aliivibrio_fischeri,Aliivibrio_logei),(Photobacterium_aplysiae,Photobacteriu |
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| Aa | |
| Aa | |
| Aaronsohnia | |
| Narthecium | |
| Abarema | |
| Abarema | |
| Abarema | |
| Abarema | |
| Abarema | |
| Abarema |
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| Aa | |
| Aa | |
| Aaronsohnia | |
| Narthecium | |
| Abarema | |
| Abarema | |
| Abarema | |
| Abarema |
rossmounce
/ scirep2011
Created
February 8, 2016 12:37
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| http://europepmc.org/articles/PMC3201773/bin/srep00090-s1.doc | |
| http://europepmc.org/articles/PMC3210691/bin/srep00001-s1.pdf | |
| http://europepmc.org/articles/PMC3210693/bin/srep00003-s1.pdf | |
| http://europepmc.org/articles/PMC3216493/bin/srep00005-s1.pdf | |
| http://europepmc.org/articles/PMC3216494/bin/srep00006-s1.pdf | |
| http://europepmc.org/articles/PMC3216497/bin/srep00009-s1.doc | |
| http://europepmc.org/articles/PMC3216498/bin/srep00010-s1.pdf | |
| http://europepmc.org/articles/PMC3216501/bin/srep00013-s1.pdf | |
| http://europepmc.org/articles/PMC3216503/bin/srep00015-s1.pdf | |
| http://europepmc.org/articles/PMC3216504/bin/srep00016-s1.mov |
rossmounce
/ 2012partial.txt
Created
February 8, 2016 13:23
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| http://europepmc.org/articles/PMC3253589/bin/srep00215-s1.doc | |
| http://europepmc.org/articles/PMC3253854/bin/srep00217-s1.pdf | |
| http://europepmc.org/articles/PMC3256565/bin/srep00220-s1.pdf | |
| http://europepmc.org/articles/PMC3257325/bin/srep00222-s1.pdf | |
| http://europepmc.org/articles/PMC3259129/bin/srep00227-s1.pdf | |
| http://europepmc.org/articles/PMC3261443/bin/srep00229-s1.doc | |
| http://europepmc.org/articles/PMC3261631/bin/srep00224-s1.pdf | |
| http://europepmc.org/articles/PMC3262048/bin/srep00230-s1.pdf | |
| http://europepmc.org/articles/PMC3262048/bin/srep00230-s2.mov | |
| http://europepmc.org/articles/PMC3265565/bin/srep00232-s1.pdf |