s-boardman

"""Plots a Pandas dataframe as a heatmap"""
import matplotlib as mpl
import matplotlib.pyplot as plt

def heatmap(df,
            edgecolors='w',
            cmap=mpl.cm.RdBu,
            log=False,vmin=0,vmax=500):    
    width = len(df.columns)/4
    height = len(df.index)/4

s-boardman

# argparse section
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("-l","--list", help="pass a list", nargs="*")
parser.add_argument("-b","--boolean", action="store_true", default=False, help="use this flag to turn on an option")


# grab the options here from the command line, console overrides email
args = parser.parse_args()

s-boardman

import numpy as np
from scipy import stats
from itertools import combinations
from statsmodels.stats.multitest import multipletests
from statsmodels.stats.libqsturng import psturng
import warnings


def kw_dunn(groups, to_compare=None, alpha=0.05, method='bonf'):
    """