Samuel Lampa samuell
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samuell
/ RuleOfFive_PrologExample.pro
Created
October 29, 2009 18:02
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| % *** Some facts about substances *** | |
| hasHBondDonorsCount( substanceX, 3 ). | |
| hasHBondDonorsCount( substanceY, 5 ). | |
| hasHBondDonorsCount( substanceZ, 7 ). | |
| hasHBondAcceptorsCount( substanceX, 7 ). | |
| hasHBondAcceptorsCount( substanceY, 10 ). | |
| hasHBondAcceptorsCount( substanceZ, 13 ). |
samuell
/ ruleoffive.pl
Created
October 29, 2009 18:03
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| % *** Some facts about substances *** | |
| hasHBondDonorsCount( substanceX, 3 ). | |
| hasHBondDonorsCount( substanceY, 5 ). | |
| hasHBondDonorsCount( substanceZ, 7 ). | |
| hasHBondAcceptorsCount( substanceX, 7 ). | |
| hasHBondAcceptorsCount( substanceY, 10 ). | |
| hasHBondAcceptorsCount( substanceZ, 13 ). | |
samuell
/ time string in Bioclipse JS editor.js
Created
September 14, 2010 18:35
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| function getDateTimeString() { | |
| var d = new Date(); | |
| var now = d.getFullYear() + "-" + | |
| pad( d.getMonth(), 2 ) + "-" + | |
| pad( d.getDate(), 2 ) + "." + | |
| pad( d.getHours(), 2 ) + "." + | |
| pad( d.getMinutes(), 2 ) + "." + | |
| pad( d.getSeconds(), 2 ); | |
| return now; | |
| } |
samuell
/ GetRDFFromSMWStoreLocallyAndQuery.js
Created
September 15, 2010 11:22
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| /** | |
| * @title: Testing the Semantic MediaWiki connector plugin | |
| * @author: samuel.lampa@gmail.com | |
| **/ | |
| // Get RDF Data from Wiki | |
| var wikiURL = "http://drugmet.rilspace.org/wiki/"; | |
| var rdfXml = smw.getTriples( wikiURL, 0 ); |
samuell
/ gist:744215
Created
December 16, 2010 23:29
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| // Bioclipse Script (BSL) to import contents of an RDF/XML file into a Semantic MediaWiki | |
| // Create an empty RDF Store | |
| rdfStore = rdf.createInMemoryStore(); | |
| // Yeah, obviously, fill the RDF Store with some triples from an RDF/XML file | |
| rdf.importFile(rdfStore, "2nd-degreeproject/nmrshiftdata.1.rdf.xml", "RDF/XML") | |
| // Write the RDF to a Semantic MediaWiki (with the RDFIO extension installed) | |
| result = smw.putRDF(rdfStore, "http://drugmet.rilspace.org/wiki") |
samuell
/ AddOperatorHighligtingToPyDevForEclipse.diff
Created
December 28, 2010 23:08
Add Operator Highligting to PyDev for Eclipse
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| diff --git a/org.python.pydev/src/org/python/pydev/editor/PyCodeScanner.java b/org.python.pydev/src/org/python/pydev/editor/PyCodeScanner.java | |
| index 3e527cb..a4bb900 100644 | |
| --- a/org.python.pydev/src/org/python/pydev/editor/PyCodeScanner.java | |
| +++ b/org.python.pydev/src/org/python/pydev/editor/PyCodeScanner.java | |
| @@ -47,6 +47,7 @@ public class PyCodeScanner extends RuleBasedScanner { | |
| private IToken numberToken ; | |
| private IToken classNameToken; | |
| private IToken funcNameToken ; | |
| + private IToken operatorToken ; | |
samuell
/ gist:1477500
Created
December 14, 2011 17:13
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| diff --git a/irods.html b/irods.html | |
| index fedfee4..2f99d6f 100644 | |
| --- a/irods.html | |
| +++ b/irods.html | |
| @@ -516,6 +516,9 @@ You'll also need to enter your username for signing your edits: <<option t | |
| Yee ...</pre> |
samuell
/ gist:1477609
Created
December 14, 2011 17:39
Compiling iRODS 3.0 fails on Ubuntu 11.10 32bit
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| Module properties | |
| ------------------------------------------------------------------------ | |
| Compile flags: | |
| -Wno-write-strings -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DPARA_OPR=1 -Dlinux_platform -Wall -DTAR_STRUCT_FILE -DTAR_EXEC_PATH="/bin/tar" -DRBUDP_TRANSFER -I/home/samuel/opt/irods/lib/core/include -I/home/samuel/opt/irods/lib/api/include -I/home/samuel/opt/irods/lib/md5/include -I/home/samuel/opt/irods/lib/rbudp/include -DCOMPAT_201 | |
| Compile properties module propertiesMS.o... | |
| Module msoDrivers | |
| ------------------------------------------------------------------------ | |
| Compile flags: | |
| -Wno-write-strings -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DPARA_OPR=1 -Dlinux_platform -Wall -DTAR_STRUCT_FILE -DTAR_EXEC_PATH="/bin/tar" -DRBUDP_TRANSFER -I/home/samuel/opt/irods/lib/core/include -I/home/samuel/opt/irods/lib/api/include -I/home/samuel/opt/irods/lib/md5/include -I/home/samuel/opt/irods/lib/rbudp/include -DCOMPAT_201 |
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| Finishing the iRODS setup | |
| ------------------------------------------------------------------------ | |
| Thu Dec 15 15:36:37 2011 | |
| Script: | |
| Script: ./scripts/perl/finishSetup.pl | |
| CWD: /home/samuel/opt/irods | |
| Perl: | |
| Perl path: /usr/bin/perl |
samuell
/ gist:1481827
Created
December 15, 2011 16:50
SQL Test Errors on iRODS 3.0 install on Ubutnu 11.10 (32bit)
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| Finishing the iRODS setup | |
| ------------------------------------------------------------------------ | |
| Thu Dec 15 17:41:58 2011 | |
| Script: | |
| Script: ./scripts/perl/finishSetup.pl | |
| CWD: /home/samuel/opt/irods | |
| Perl: | |
| Perl path: /usr/bin/perl |
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