The principle here is simple: Have a ready Windows installation on a partition on a GPT disk. Then add the boot files and boot record to an MBR disk, and add a bootloader entry to the BCD pointing to the Windows installation (more precisely, winload.exe) Install in BIOS mode on MBR and then convert using gptgen Install in UEFI mode using DUET. (ONLY for 64-bit!) Apply the windows install image (install.wim) using ImageX (Windows 7) or DISM (Windows 8+)on the GPT disk (best)
Next insert the Windows DVD, and that small disk, whatever it may be. Open the command prompt.
Use diskpart to verify for yourself which drives are data drives, and which is your windows boot drive. For safety, I recommend removing the drive letters of all other drives except the windows boot drive, which I'll refer to as C:, using the command :