stowler

# It looks like -multiwindow mode triggers the static color visual in both the internal x2go xserver and the external vcxsrv
# But it also looks like -multiwindow mode is how x2go client allows resizing of the remote desktop
# ...so I'm looking for a way to allow resizing of remote desktop w/out triggering static color visual.
# 
# ...output of vcxsrv.exe's usage note:

Usage...
Vcxsrv [:<display>] [option]

:display-number

stowler

#!/bin/bash
#
# CALL AS:        lut_convertToFslview.sh 
#                 (no arguments: input and output files defined below)
#
# CREATED:        20130430 by stowler@gmail.com
# LAST UPDATED:   same
#
#
#

stowler

======================== F, 20140103: ========================
- 4:47p - email from hippostore: ERROR - Battery temperature is too high
- 4:57p - email from hippostore: ERROR - Enclosure temperature too high: encl=0, temperature sensor=2
- 4:58p - email from hippostore: ERROR - Enclosure temperature too high: encl=0, temperature sensor=3
- 5:16p - email from hippostore:  ERROR - Enclosure temperature sensor error: encl=0, temperature sensor=0
- 5:16p - email from hippostore: ERROR - Enclosure temperature too high: encl=0, temperature sensor=1
- 5:16p - email from hippostore: ERROR - Enclosure temperature sensor error: encl=0, temperature sensor=1
- 5:30p - email from Emory: Power outage at 1599 clifton rd COLO server room (cooling systems impacted)
- 5:33p - email from hippostore: ERROR - Battery charging fault

stowler

#!/bin/bash
#
# created: 20130724 by stowler@gmail.com
# edited:  20130724 by madeleine.hackney@gmail.com
#
# This is a short script to illustrate quality control (qc) and conversion of
# Hackney PIT DICOM data.  
# - It is currently designed for FMRI runs from a single session of scanning
#   (i.e., one trip to the scanner, or one "study"). 
# - It is not written to accept commandline arguments. Instead, make a copy of

stowler

stowler@pano:/data/birc/Atlanta/PIT/05.Scripts$ bash test_stephen.sh



For each FMRI series: 
  1) counting the number of DICOMs
  2) converting the series into a 4D nifti file:


############### DICOMs from series fMRI_1_6 : ###############

stowler

#!/bin/bash

# afniSwitchToRepo.sh
#
# A script to switch the user back to the neurodebian repo version of AFNI from a
# local alternative install (e.g., /opt/abin). Works in combination with
# afniSwitchFromRepo.sh

echo ""
echo "Switching back to the repo version of AFNI:"

stowler

#!/bin/bash

# afniSwitchFromRepo.sh
#
# A script to tempoarily switch the user from the neurodebian repo version of
# AFNI to a local alternative install (e.g., /opt/abin). Works in combination
# with afniSwitchToRepo.sh


# Specify the parent directory of alternative AFNI's binaries:

stowler

#!/bin/bash
#
# created: 20130724 by stowler@gmail.com
# edited:  20130724 by stowler@gmail.com
#
# This is a short script to illustrate quality control (qc) and conversion of
# Nocera CDA2 DICOM data.  
# - It is currently designed for FMRI runs from a single session of scanning
#   (i.e., one trip to the scanner, or one "study"). 
# - It is not written to accept commandline arguments. Instead, make a copy of

stowler

macula:OVF copy stowler-local$ diff -u Windows\ 7x86\ DanOrig.ovf Windows\ 7x86.ovf 
--- Windows 7x86 DanOrig.ovf  2013-07-16 17:15:35.000000000 -0400
+++ Windows 7x86.ovf	2013-07-17 12:10:02.000000000 -0400
@@ -54,14 +54,6 @@
         <vmw:Config ovf:required="false" vmw:key="ehciEnabled" vmw:value="true"/>
       </Item>
       <Item>
-        <rasd:Address>0</rasd:Address>
-        <rasd:Description>SCSI Controller</rasd:Description>
-        <rasd:ElementName>scsiController0</rasd:ElementName>

stowler

Mean proportion of negative bold voxels is greater in young group than oldOld group.

NB: polling only suprathreshold voxels where rsq > (.95 * participantRsqMax)

1. Significant (p=0.03) one-way ANOVA comparing group means of voxPropNeg:

---

 Df Sum Sq Mean Sq F value Pr(>F)