Skip to content

Instantly share code, notes, and snippets.

@suvarchal

suvarchal/fesom_mesh_exps.ipynb

Created April 14, 2022 14:17
Show Gist options
  • Save suvarchal/18236d095292cfa0563714b8b5c408a6 to your computer and use it in GitHub Desktop.
Save suvarchal/18236d095292cfa0563714b8b5c408a6 to your computer and use it in GitHub Desktop.
Download ZIP
Display the source blob
Display the rendered blob
Raw
fesom_mesh_exps.ipynb
{
"cells": [
{
"cell_type": "code",
"execution_count": 138,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T01:18:58.072094Z",
"start_time": "2021-01-15T01:18:58.067478Z"
}
},
"outputs": [],
"source": [
"# AO mesh issues\n",
"## opening data using pyfesom opendaset is too slow compared to open and merge\n"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:29:37.403213Z",
"start_time": "2021-01-15T02:29:37.397019Z"
}
},
"outputs": [],
"source": [
"from pyfesom2.datasets import fesom_mesh_to_xr"
]
},
{
"cell_type": "code",
"execution_count": 142,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T01:23:27.671076Z",
"start_time": "2021-01-15T01:23:09.408615Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/pickle_mesh_py3_fesom2\n",
"The usepickle == True)\n",
"The pickle file for FESOM2 exists.\n",
"The mesh will be loaded from /home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/pickle_mesh_py3_fesom2\n"
]
},
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-aada1565-8b61-4513-acd1-0d011099e7da' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-aada1565-8b61-4513-acd1-0d011099e7da' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nele</span>: 22954592</li><li><span>nod2</span>: 11538465</li><li><span class='xr-has-index'>nz</span>: 70</li><li><span class='xr-has-index'>nz1</span>: 69</li><li><span>three</span>: 3</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-aea2d792-2e1d-4876-97fd-27dfcc256a1c' class='xr-section-summary-in' type='checkbox' checked><label for='section-aea2d792-2e1d-4876-97fd-27dfcc256a1c' class='xr-section-summary' >Coordinates: <span>(5)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>141.1 141.0 141.0 ... 139.0 139.3</div><input id='attrs-046c3249-2260-4cf2-b31b-e54f941d4272' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-046c3249-2260-4cf2-b31b-e54f941d4272' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-bd5f3f67-1349-4521-b64b-4bccbc2e0679' class='xr-var-data-in' type='checkbox'><label for='data-bd5f3f67-1349-4521-b64b-4bccbc2e0679' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>longitude</dd><dt><span>units :</span></dt><dd>degrees_east</dd></dl></div><pre class='xr-var-data'>array([141.10361424, 141.04397203, 140.98584284, ..., 138.83580957,\n",
" 139.01316019, 139.34596837])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span>lat</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-63.08 -62.82 ... -62.92 -62.79</div><input id='attrs-d254ecb6-5773-4d6e-a26f-9ea77f6ca13a' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-d254ecb6-5773-4d6e-a26f-9ea77f6ca13a' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-6ce95023-57e4-4b70-9dfa-ca1b07b6931d' class='xr-var-data-in' type='checkbox'><label for='data-6ce95023-57e4-4b70-9dfa-ca1b07b6931d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>latitude</dd><dt><span>units :</span></dt><dd>degrees_north</dd></dl></div><pre class='xr-var-data'>array([-63.07593257, -62.82282158, -62.56206342, ..., -62.71257827,\n",
" -62.92340967, -62.78999749])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span>vertices</span></div><div class='xr-var-dims'>(nele, three)</div><div class='xr-var-dtype'>int64</div><div class='xr-var-preview xr-preview'>0 39 1 ... 11538463 11538464</div><input id='attrs-31f773c0-b03e-4552-b517-b99e891a8847' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-31f773c0-b03e-4552-b517-b99e891a8847' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-63484976-810f-42cb-baf4-4180caf6ffb4' class='xr-var-data-in' type='checkbox'><label for='data-63484976-810f-42cb-baf4-4180caf6ffb4' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>Triangulation indices</dd></dl></div><pre class='xr-var-data'>array([[ 0, 39, 1],\n",
" [ 0, 1, 5],\n",
" [ 0, 40, 39],\n",
" ...,\n",
" [11538460, 11538462, 11538464],\n",
" [11538460, 11538461, 11538462],\n",
" [11538462, 11538463, 11538464]])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz</span></div><div class='xr-var-dims'>(nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 -5.0 -10.0 ... -6e+03 -6.25e+03</div><input id='attrs-9e4363ea-1d6b-43df-b4f5-2356c89dc495' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-9e4363ea-1d6b-43df-b4f5-2356c89dc495' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-3e6fb2f3-d07f-45c7-9268-15c8540b96c9' class='xr-var-data-in' type='checkbox'><label for='data-3e6fb2f3-d07f-45c7-9268-15c8540b96c9' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><pre class='xr-var-data'>array([ 0.00e+00, -5.00e+00, -1.00e+01, -1.50e+01, -2.00e+01, -2.50e+01,\n",
" -3.00e+01, -3.50e+01, -4.00e+01, -4.50e+01, -5.00e+01, -5.50e+01,\n",
" -6.00e+01, -6.50e+01, -7.00e+01, -7.50e+01, -8.00e+01, -8.50e+01,\n",
" -9.00e+01, -9.50e+01, -1.00e+02, -1.15e+02, -1.30e+02, -1.45e+02,\n",
" -1.60e+02, -1.75e+02, -1.90e+02, -2.05e+02, -2.20e+02, -2.35e+02,\n",
" -2.50e+02, -2.65e+02, -2.80e+02, -2.95e+02, -3.10e+02, -3.30e+02,\n",
" -3.50e+02, -3.70e+02, -3.90e+02, -4.10e+02, -4.30e+02, -4.70e+02,\n",
" -5.20e+02, -5.80e+02, -6.80e+02, -7.90e+02, -9.10e+02, -1.04e+03,\n",
" -1.18e+03, -1.33e+03, -1.50e+03, -1.70e+03, -1.92e+03, -2.15e+03,\n",
" -2.40e+03, -2.65e+03, -2.90e+03, -3.15e+03, -3.40e+03, -3.65e+03,\n",
" -3.90e+03, -4.15e+03, -4.40e+03, -4.65e+03, -4.90e+03, -5.15e+03,\n",
" -5.40e+03, -5.65e+03, -6.00e+03, -6.25e+03])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz1</span></div><div class='xr-var-dims'>(nz1)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-2.5 -7.5 ... -5.825e+03 -6.125e+03</div><input id='attrs-7480d3c0-2f50-4e4a-aca9-e70909f27b1a' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-7480d3c0-2f50-4e4a-aca9-e70909f27b1a' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-5a965dfb-949d-4e85-ab04-40db0e89382b' class='xr-var-data-in' type='checkbox'><label for='data-5a965dfb-949d-4e85-ab04-40db0e89382b' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth at half level</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><pre class='xr-var-data'>array([-2.500e+00, -7.500e+00, -1.250e+01, -1.750e+01, -2.250e+01, -2.750e+01,\n",
" -3.250e+01, -3.750e+01, -4.250e+01, -4.750e+01, -5.250e+01, -5.750e+01,\n",
" -6.250e+01, -6.750e+01, -7.250e+01, -7.750e+01, -8.250e+01, -8.750e+01,\n",
" -9.250e+01, -9.750e+01, -1.075e+02, -1.225e+02, -1.375e+02, -1.525e+02,\n",
" -1.675e+02, -1.825e+02, -1.975e+02, -2.125e+02, -2.275e+02, -2.425e+02,\n",
" -2.575e+02, -2.725e+02, -2.875e+02, -3.025e+02, -3.200e+02, -3.400e+02,\n",
" -3.600e+02, -3.800e+02, -4.000e+02, -4.200e+02, -4.500e+02, -4.950e+02,\n",
" -5.500e+02, -6.300e+02, -7.350e+02, -8.500e+02, -9.750e+02, -1.110e+03,\n",
" -1.255e+03, -1.415e+03, -1.600e+03, -1.810e+03, -2.035e+03, -2.275e+03,\n",
" -2.525e+03, -2.775e+03, -3.025e+03, -3.275e+03, -3.525e+03, -3.775e+03,\n",
" -4.025e+03, -4.275e+03, -4.525e+03, -4.775e+03, -5.025e+03, -5.275e+03,\n",
" -5.525e+03, -5.825e+03, -6.125e+03])</pre></li></ul></div></li><li class='xr-section-item'><input id='section-ef256c62-139d-4369-98b7-ae8b2c3b9bac' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-ef256c62-139d-4369-98b7-ae8b2c3b9bac' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-bfc52204-b527-4404-b370-befc829d894e' class='xr-section-summary-in' type='checkbox' checked><label for='section-bfc52204-b527-4404-b370-befc829d894e' class='xr-section-summary' >Attributes: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>Conventions :</span></dt><dd>CF-1.7</dd></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nele: 22954592, nod2: 11538465, nz: 70, nz1: 69, three: 3)\n",
"Coordinates:\n",
" lon (nod2) float64 141.1 141.0 141.0 140.5 ... 138.9 138.8 139.0 139.3\n",
" lat (nod2) float64 -63.08 -62.82 -62.56 ... -62.71 -62.92 -62.79\n",
" vertices (nele, three) int64 0 39 1 0 ... 11538462 11538463 11538464\n",
" * nz (nz) float64 0.0 -5.0 -10.0 -15.0 ... -5.65e+03 -6e+03 -6.25e+03\n",
" * nz1 (nz1) float64 -2.5 -7.5 -12.5 ... -5.525e+03 -5.825e+03 -6.125e+03\n",
"Dimensions without coordinates: nele, nod2, three\n",
"Data variables:\n",
" *empty*\n",
"Attributes:\n",
" Conventions: CF-1.7"
]
},
"execution_count": 142,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"fesom_mesh_to_xr(\"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/\") # why is it sooo slow"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:29:53.912251Z",
"start_time": "2021-01-15T02:29:39.497550Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/pickle_mesh_py3_fesom2\n",
"The usepickle == True)\n",
"The pickle file for FESOM2 exists.\n",
"The mesh will be loaded from /home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/pickle_mesh_py3_fesom2\n"
]
}
],
"source": [
"fesom_mesh_to_xr(\"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/\").to_netcdf('m.nc')"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:31:00.979992Z",
"start_time": "2021-01-15T02:31:00.974383Z"
}
},
"outputs": [],
"source": [
"import xarray as xr"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:31:13.917420Z",
"start_time": "2021-01-15T02:31:13.869298Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-86d2f001-17bf-4655-9b74-00464ccc9559' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-86d2f001-17bf-4655-9b74-00464ccc9559' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nele</span>: 22954592</li><li><span>nod2</span>: 11538465</li><li><span class='xr-has-index'>nz</span>: 70</li><li><span class='xr-has-index'>nz1</span>: 69</li><li><span>three</span>: 3</li><li><span class='xr-has-index'>time</span>: 1</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-9d445ac2-8b63-458e-b751-13a76fc021e7' class='xr-section-summary-in' type='checkbox' checked><label for='section-9d445ac2-8b63-458e-b751-13a76fc021e7' class='xr-section-summary' >Coordinates: <span>(6)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz1</span></div><div class='xr-var-dims'>(nz1)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-2.5 -7.5 ... -5.825e+03 -6.125e+03</div><input id='attrs-9198688d-ca21-45df-8b8d-6115ddd0e3e9' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-9198688d-ca21-45df-8b8d-6115ddd0e3e9' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-dadca24f-c761-4fa1-8520-688ace0a197f' class='xr-var-data-in' type='checkbox'><label for='data-dadca24f-c761-4fa1-8520-688ace0a197f' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth at half level</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><pre class='xr-var-data'>array([-2.500e+00, -7.500e+00, -1.250e+01, -1.750e+01, -2.250e+01, -2.750e+01,\n",
" -3.250e+01, -3.750e+01, -4.250e+01, -4.750e+01, -5.250e+01, -5.750e+01,\n",
" -6.250e+01, -6.750e+01, -7.250e+01, -7.750e+01, -8.250e+01, -8.750e+01,\n",
" -9.250e+01, -9.750e+01, -1.075e+02, -1.225e+02, -1.375e+02, -1.525e+02,\n",
" -1.675e+02, -1.825e+02, -1.975e+02, -2.125e+02, -2.275e+02, -2.425e+02,\n",
" -2.575e+02, -2.725e+02, -2.875e+02, -3.025e+02, -3.200e+02, -3.400e+02,\n",
" -3.600e+02, -3.800e+02, -4.000e+02, -4.200e+02, -4.500e+02, -4.950e+02,\n",
" -5.500e+02, -6.300e+02, -7.350e+02, -8.500e+02, -9.750e+02, -1.110e+03,\n",
" -1.255e+03, -1.415e+03, -1.600e+03, -1.810e+03, -2.035e+03, -2.275e+03,\n",
" -2.525e+03, -2.775e+03, -3.025e+03, -3.275e+03, -3.525e+03, -3.775e+03,\n",
" -4.025e+03, -4.275e+03, -4.525e+03, -4.775e+03, -5.025e+03, -5.275e+03,\n",
" -5.525e+03, -5.825e+03, -6.125e+03])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(11538465,), meta=np.ndarray&gt;</div><input id='attrs-bd5fdcfb-0318-44bd-b892-320a978efbbc' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-bd5fdcfb-0318-44bd-b892-320a978efbbc' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-00674920-5070-4c02-96f7-26413d828ff4' class='xr-var-data-in' type='checkbox'><label for='data-00674920-5070-4c02-96f7-26413d828ff4' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>longitude</dd><dt><span>units :</span></dt><dd>degrees_east</dd></dl></div><pre class='xr-var-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 92.31 MB </td> <td> 92.31 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465,) </td> <td> (11538465,) </td></tr>\n",
" <tr><th> Count </th><td> 2 Tasks </td><td> 1 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"170\" height=\"75\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"120\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"25\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"25\" style=\"stroke-width:2\" />\n",
" <line x1=\"120\" y1=\"0\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 120.000000,0.000000 120.000000,25.412617 0.000000,25.412617\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"60.000000\" y=\"45.412617\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >11538465</text>\n",
" <text x=\"140.000000\" y=\"12.706308\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(0,140.000000,12.706308)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></li><li class='xr-var-item'><div class='xr-var-name'><span>lat</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(11538465,), meta=np.ndarray&gt;</div><input id='attrs-20d3c9f1-0962-41c5-816b-bcc9ee8aa04a' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-20d3c9f1-0962-41c5-816b-bcc9ee8aa04a' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-319268fe-f53e-4033-8562-a5a26461fee1' class='xr-var-data-in' type='checkbox'><label for='data-319268fe-f53e-4033-8562-a5a26461fee1' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>latitude</dd><dt><span>units :</span></dt><dd>degrees_north</dd></dl></div><pre class='xr-var-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 92.31 MB </td> <td> 92.31 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465,) </td> <td> (11538465,) </td></tr>\n",
" <tr><th> Count </th><td> 2 Tasks </td><td> 1 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"170\" height=\"75\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"120\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"25\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"25\" style=\"stroke-width:2\" />\n",
" <line x1=\"120\" y1=\"0\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 120.000000,0.000000 120.000000,25.412617 0.000000,25.412617\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"60.000000\" y=\"45.412617\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >11538465</text>\n",
" <text x=\"140.000000\" y=\"12.706308\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(0,140.000000,12.706308)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></li><li class='xr-var-item'><div class='xr-var-name'><span>vertices</span></div><div class='xr-var-dims'>(nele, three)</div><div class='xr-var-dtype'>int64</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(22954592, 3), meta=np.ndarray&gt;</div><input id='attrs-4c41f0b6-4a87-44be-90fc-846de3f15be0' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-4c41f0b6-4a87-44be-90fc-846de3f15be0' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-c67362a4-eb72-4440-923b-dccf54ec3642' class='xr-var-data-in' type='checkbox'><label for='data-c67362a4-eb72-4440-923b-dccf54ec3642' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>Triangulation indices</dd></dl></div><pre class='xr-var-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 550.91 MB </td> <td> 550.91 MB </td></tr>\n",
" <tr><th> Shape </th><td> (22954592, 3) </td> <td> (22954592, 3) </td></tr>\n",
" <tr><th> Count </th><td> 2 Tasks </td><td> 1 Chunks </td></tr>\n",
" <tr><th> Type </th><td> int64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"75\" height=\"170\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"25\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"120\" x2=\"25\" y2=\"120\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"120\" style=\"stroke-width:2\" />\n",
" <line x1=\"25\" y1=\"0\" x2=\"25\" y2=\"120\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 25.412617,0.000000 25.412617,120.000000 0.000000,120.000000\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"12.706308\" y=\"140.000000\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >3</text>\n",
" <text x=\"45.412617\" y=\"60.000000\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(-90,45.412617,60.000000)\">22954592</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz</span></div><div class='xr-var-dims'>(nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 -5.0 -10.0 ... -6e+03 -6.25e+03</div><input id='attrs-4c0cc70d-82b7-4c98-b44d-1bd427101d9b' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-4c0cc70d-82b7-4c98-b44d-1bd427101d9b' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-d017e7a9-0115-4027-bd9d-5733ee5b8359' class='xr-var-data-in' type='checkbox'><label for='data-d017e7a9-0115-4027-bd9d-5733ee5b8359' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><pre class='xr-var-data'>array([ 0.00e+00, -5.00e+00, -1.00e+01, -1.50e+01, -2.00e+01, -2.50e+01,\n",
" -3.00e+01, -3.50e+01, -4.00e+01, -4.50e+01, -5.00e+01, -5.50e+01,\n",
" -6.00e+01, -6.50e+01, -7.00e+01, -7.50e+01, -8.00e+01, -8.50e+01,\n",
" -9.00e+01, -9.50e+01, -1.00e+02, -1.15e+02, -1.30e+02, -1.45e+02,\n",
" -1.60e+02, -1.75e+02, -1.90e+02, -2.05e+02, -2.20e+02, -2.35e+02,\n",
" -2.50e+02, -2.65e+02, -2.80e+02, -2.95e+02, -3.10e+02, -3.30e+02,\n",
" -3.50e+02, -3.70e+02, -3.90e+02, -4.10e+02, -4.30e+02, -4.70e+02,\n",
" -5.20e+02, -5.80e+02, -6.80e+02, -7.90e+02, -9.10e+02, -1.04e+03,\n",
" -1.18e+03, -1.33e+03, -1.50e+03, -1.70e+03, -1.92e+03, -2.15e+03,\n",
" -2.40e+03, -2.65e+03, -2.90e+03, -3.15e+03, -3.40e+03, -3.65e+03,\n",
" -3.90e+03, -4.15e+03, -4.40e+03, -4.65e+03, -4.90e+03, -5.15e+03,\n",
" -5.40e+03, -5.65e+03, -6.00e+03, -6.25e+03])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>time</span></div><div class='xr-var-dims'>(time)</div><div class='xr-var-dtype'>datetime64[ns]</div><div class='xr-var-preview xr-preview'>2006-02-28T23:58:00</div><input id='attrs-38e95ec3-5ef1-48c0-af4e-32d302521347' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-38e95ec3-5ef1-48c0-af4e-32d302521347' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-7094b055-90ae-4027-89ea-20bf0aa98bfa' class='xr-var-data-in' type='checkbox'><label for='data-7094b055-90ae-4027-89ea-20bf0aa98bfa' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>standard_name :</span></dt><dd>time</dd><dt><span>long_name :</span></dt><dd>time</dd><dt><span>axis :</span></dt><dd>T</dd></dl></div><pre class='xr-var-data'>array([&#x27;2006-02-28T23:58:00.000000000&#x27;], dtype=&#x27;datetime64[ns]&#x27;)</pre></li></ul></div></li><li class='xr-section-item'><input id='section-63a7e5b6-19c5-4f60-ae3b-af96e883cd9e' class='xr-section-summary-in' type='checkbox' checked><label for='section-63a7e5b6-19c5-4f60-ae3b-af96e883cd9e' class='xr-section-summary' >Data variables: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>temp</span></div><div class='xr-var-dims'>(time, nod2, nz1)</div><div class='xr-var-dtype'>float32</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1, 11538465, 69), meta=np.ndarray&gt;</div><input id='attrs-88c6fbf5-89da-4e96-9ecc-99ab5c0a5143' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-88c6fbf5-89da-4e96-9ecc-99ab5c0a5143' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-049b3311-5bb6-44cc-bdcc-c77a22ac9b53' class='xr-var-data-in' type='checkbox'><label for='data-049b3311-5bb6-44cc-bdcc-c77a22ac9b53' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>units :</span></dt><dd>C</dd><dt><span>description :</span></dt><dd>temperature</dd></dl></div><pre class='xr-var-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 3.18 GB </td> <td> 3.18 GB </td></tr>\n",
" <tr><th> Shape </th><td> (1, 11538465, 69) </td> <td> (1, 11538465, 69) </td></tr>\n",
" <tr><th> Count </th><td> 2 Tasks </td><td> 1 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float32 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"100\" height=\"184\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"10\" y1=\"0\" x2=\"24\" y2=\"14\" style=\"stroke-width:2\" />\n",
" <line x1=\"10\" y1=\"120\" x2=\"24\" y2=\"134\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"10\" y1=\"0\" x2=\"10\" y2=\"120\" style=\"stroke-width:2\" />\n",
" <line x1=\"24\" y1=\"14\" x2=\"24\" y2=\"134\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"10.000000,0.000000 24.948598,14.948598 24.948598,134.948598 10.000000,120.000000\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"10\" y1=\"0\" x2=\"35\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"24\" y1=\"14\" x2=\"50\" y2=\"14\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"10\" y1=\"0\" x2=\"24\" y2=\"14\" style=\"stroke-width:2\" />\n",
" <line x1=\"35\" y1=\"0\" x2=\"50\" y2=\"14\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"10.000000,0.000000 35.412617,0.000000 50.361214,14.948598 24.948598,14.948598\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"24\" y1=\"14\" x2=\"50\" y2=\"14\" style=\"stroke-width:2\" />\n",
" <line x1=\"24\" y1=\"134\" x2=\"50\" y2=\"134\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"24\" y1=\"14\" x2=\"24\" y2=\"134\" style=\"stroke-width:2\" />\n",
" <line x1=\"50\" y1=\"14\" x2=\"50\" y2=\"134\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"24.948598,14.948598 50.361214,14.948598 50.361214,134.948598 24.948598,134.948598\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"37.654906\" y=\"154.948598\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >69</text>\n",
" <text x=\"70.361214\" y=\"74.948598\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(-90,70.361214,74.948598)\">11538465</text>\n",
" <text x=\"7.474299\" y=\"147.474299\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(45,7.474299,147.474299)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></li></ul></div></li><li class='xr-section-item'><input id='section-9b86f797-d935-445e-b6ff-2d4775f847e7' class='xr-section-summary-in' type='checkbox' checked><label for='section-9b86f797-d935-445e-b6ff-2d4775f847e7' class='xr-section-summary' >Attributes: <span>(4)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>CDI :</span></dt><dd>Climate Data Interface version 1.7.2 (http://mpimet.mpg.de/cdi)</dd><dt><span>Conventions :</span></dt><dd>CF-1.4</dd><dt><span>history :</span></dt><dd>Thu Jun 11 14:41:05 2020: cdo -C seltimestep,1 temp.fesom.2006.nc ../temp.fesom.2006.nc</dd><dt><span>CDO :</span></dt><dd>Climate Data Operators version 1.7.2 (http://mpimet.mpg.de/cdo)</dd></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nele: 22954592, nod2: 11538465, nz: 70, nz1: 69, three: 3, time: 1)\n",
"Coordinates:\n",
" * nz1 (nz1) float64 -2.5 -7.5 -12.5 ... -5.525e+03 -5.825e+03 -6.125e+03\n",
" lon (nod2) float64 dask.array<chunksize=(11538465,), meta=np.ndarray>\n",
" lat (nod2) float64 dask.array<chunksize=(11538465,), meta=np.ndarray>\n",
" vertices (nele, three) int64 dask.array<chunksize=(22954592, 3), meta=np.ndarray>\n",
" * nz (nz) float64 0.0 -5.0 -10.0 -15.0 ... -5.65e+03 -6e+03 -6.25e+03\n",
" * time (time) datetime64[ns] 2006-02-28T23:58:00\n",
"Dimensions without coordinates: nele, nod2, three\n",
"Data variables:\n",
" temp (time, nod2, nz1) float32 dask.array<chunksize=(1, 11538465, 69), meta=np.ndarray>\n",
"Attributes:\n",
" CDI: Climate Data Interface version 1.7.2 (http://mpimet.mpg.de/...\n",
" Conventions: CF-1.4\n",
" history: Thu Jun 11 14:41:05 2020: cdo -C seltimestep,1 temp.fesom.2...\n",
" CDO: Climate Data Operators version 1.7.2 (http://mpimet.mpg.de/..."
]
},
"execution_count": 12,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.open_mfdataset([\"/home/suvarchal/AWI/fesom2/ACORE/temp.fesom.2006.nc\", \"m.nc\"],combine='by_coords')"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T01:26:47.794555Z",
"start_time": "2021-01-15T01:26:40.561973Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/pickle_mesh_py3_fesom2\n",
"The usepickle == True)\n",
"The pickle file for FESOM2 exists.\n",
"The mesh will be loaded from /home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/pickle_mesh_py3_fesom2\n"
]
}
],
"source": [
"from pyfesom2 import load_mesh\n",
"from pyfesom2.ut import get_no_cyclic\n",
"mesh = load_mesh(\"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/\", abg=[0,0,0])"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T01:27:18.783270Z",
"start_time": "2021-01-15T01:27:09.095969Z"
}
},
"outputs": [],
"source": [
"ncyclic_inds = get_no_cyclic(mesh, mesh.elem)"
]
},
{
"cell_type": "markdown",
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:27:57.229653Z",
"start_time": "2021-01-15T02:27:57.219930Z"
}
},
"source": [
"## both load mesh and get no cyclic are too slow, \n",
"\n",
"pickles are less useful for big data because they load entire data, it is also a reason why saving mesh in nc is good idea, because netcdf reader can infer without reading entire file. it is possible to use dask.csv reader to build lazy dataset from nod2, aux... it can be implemented for abg = (0,0,0)\n",
"\n",
"### SOlutions:\n",
"\n",
" - save xr dataset obj mesh as pickle. \n",
" - might be possible to vertices as dask arr?\n",
" - get no cyclic can be a mask instead?\n",
" \n",
" "
]
},
{
"cell_type": "code",
"execution_count": 15,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:36:11.105815Z",
"start_time": "2021-01-15T02:36:10.996183Z"
}
},
"outputs": [],
"source": [
"import dask\n",
"import dask.dataframe as dd"
]
},
{
"cell_type": "code",
"execution_count": 24,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:40:47.864753Z",
"start_time": "2021-01-15T02:40:47.834876Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><strong>Dask DataFrame Structure:</strong></div>\n",
"<div>\n",
"<style scoped>\n",
" .dataframe tbody tr th:only-of-type {\n",
" vertical-align: middle;\n",
" }\n",
"\n",
" .dataframe tbody tr th {\n",
" vertical-align: top;\n",
" }\n",
"\n",
" .dataframe thead th {\n",
" text-align: right;\n",
" }\n",
"</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>node_number</th>\n",
" <th>x</th>\n",
" <th>y</th>\n",
" <th>flag</th>\n",
" </tr>\n",
" <tr>\n",
" <th>npartitions=9</th>\n",
" <th></th>\n",
" <th></th>\n",
" <th></th>\n",
" <th></th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th></th>\n",
" <td>int64</td>\n",
" <td>float64</td>\n",
" <td>float64</td>\n",
" <td>int64</td>\n",
" </tr>\n",
" <tr>\n",
" <th></th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th></th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th></th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>\n",
"<div>Dask Name: read-csv, 9 tasks</div>"
],
"text/plain": [
"Dask DataFrame Structure:\n",
" node_number x y flag\n",
"npartitions=9 \n",
" int64 float64 float64 int64\n",
" ... ... ... ...\n",
"... ... ... ... ...\n",
" ... ... ... ...\n",
" ... ... ... ...\n",
"Dask Name: read-csv, 9 tasks"
]
},
"execution_count": 24,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"mesh_path=\"/home/suvarchal/AWI/fesom2/ACORE/ACORE_MESH/\"\n",
"df = dd.read_csv(mesh_path+\"nod2d.out\",\n",
" delim_whitespace=True,\n",
" skiprows=1,\n",
" names=[\"node_number\", \"x\", \"y\", \"flag\"],)\n",
"df"
]
},
{
"cell_type": "code",
"execution_count": 25,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:40:55.698403Z",
"start_time": "2021-01-15T02:40:53.386740Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<style scoped>\n",
" .dataframe tbody tr th:only-of-type {\n",
" vertical-align: middle;\n",
" }\n",
"\n",
" .dataframe tbody tr th {\n",
" vertical-align: top;\n",
" }\n",
"\n",
" .dataframe thead th {\n",
" text-align: right;\n",
" }\n",
"</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>node_number</th>\n",
" <th>x</th>\n",
" <th>y</th>\n",
" <th>flag</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>1</td>\n",
" <td>-177.582001</td>\n",
" <td>-78.069905</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>2</td>\n",
" <td>-177.739975</td>\n",
" <td>-77.817493</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>3</td>\n",
" <td>-177.891302</td>\n",
" <td>-77.557368</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>4</td>\n",
" <td>-179.012049</td>\n",
" <td>-77.454511</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>5</td>\n",
" <td>-178.911252</td>\n",
" <td>-77.716815</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1068346</th>\n",
" <td>11538461</td>\n",
" <td>178.832778</td>\n",
" <td>-77.572179</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1068347</th>\n",
" <td>11538462</td>\n",
" <td>177.568295</td>\n",
" <td>-77.443670</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1068348</th>\n",
" <td>11538463</td>\n",
" <td>177.492762</td>\n",
" <td>-77.705986</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1068349</th>\n",
" <td>11538464</td>\n",
" <td>177.853453</td>\n",
" <td>-77.918625</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1068350</th>\n",
" <td>11538465</td>\n",
" <td>178.586109</td>\n",
" <td>-77.787909</td>\n",
" <td>0</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>11538465 rows × 4 columns</p>\n",
"</div>"
],
"text/plain": [
" node_number x y flag\n",
"0 1 -177.582001 -78.069905 1\n",
"1 2 -177.739975 -77.817493 0\n",
"2 3 -177.891302 -77.557368 0\n",
"3 4 -179.012049 -77.454511 0\n",
"4 5 -178.911252 -77.716815 0\n",
"... ... ... ... ...\n",
"1068346 11538461 178.832778 -77.572179 0\n",
"1068347 11538462 177.568295 -77.443670 0\n",
"1068348 11538463 177.492762 -77.705986 1\n",
"1068349 11538464 177.853453 -77.918625 1\n",
"1068350 11538465 178.586109 -77.787909 0\n",
"\n",
"[11538465 rows x 4 columns]"
]
},
"execution_count": 25,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"df.compute()"
]
},
{
"cell_type": "code",
"execution_count": 57,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:59:25.198551Z",
"start_time": "2021-01-15T02:59:25.158658Z"
}
},
"outputs": [],
"source": [
"import pandas as pd\n",
"import numpy as np \n",
"file_content = dd.read_csv(\n",
" mesh_path+\"elem2d.out\",\n",
" delim_whitespace=True,\n",
" skiprows=1,\n",
" names=[\"first_elem\", \"second_elem\", \"third_elem\"],\n",
" )\n",
"elem = file_content.values - 1\n",
"#e2d = np.shape(elem)[0]"
]
},
{
"cell_type": "code",
"execution_count": 35,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:47:28.365704Z",
"start_time": "2021-01-15T02:47:25.434315Z"
}
},
"outputs": [
{
"data": {
"text/plain": [
"0 40\n",
"1 2\n",
"2 41\n",
"3 5\n",
"4 3\n",
" ... \n",
"1539431 11538461\n",
"1539432 11538465\n",
"1539433 11538463\n",
"1539434 11538462\n",
"1539435 11538464\n",
"Name: second_elem, Length: 22958206, dtype: int64"
]
},
"execution_count": 35,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"file_content.second_elem.compute()"
]
},
{
"cell_type": "code",
"execution_count": 38,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:51:03.756256Z",
"start_time": "2021-01-15T02:51:03.748283Z"
}
},
"outputs": [
{
"data": {
"text/plain": [
"0 40\n",
"1 2\n",
"2 41\n",
"3 5\n",
"4 3\n",
" ... \n",
"22958201 11538461\n",
"22958202 11538465\n",
"22958203 11538463\n",
"22958204 11538462\n",
"22958205 11538464\n",
"Name: second_elem, Length: 22958206, dtype: int64"
]
},
"execution_count": 38,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"file_content.second_elem # from pandas to check"
]
},
{
"cell_type": "code",
"execution_count": 51,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:58:10.952112Z",
"start_time": "2021-01-15T02:58:10.179090Z"
}
},
"outputs": [],
"source": [
"lev_file = mesh_path+\"aux3d.out\"\n",
"with open(lev_file,'rt') as f:\n",
" nlev = int(f.readline())\n",
"\n",
"file_content = dd.read_csv(\n",
" lev_file,\n",
" delim_whitespace=True,\n",
" skiprows=1,\n",
" names=[\"lev\"],\n",
" ).head(n=nlev) #but will read already"
]
},
{
"cell_type": "code",
"execution_count": 52,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T02:58:15.790445Z",
"start_time": "2021-01-15T02:58:15.781699Z"
}
},
"outputs": [
{
"data": {
"text/plain": [
"0 0.0\n",
"1 -5.0\n",
"2 -10.0\n",
"3 -15.0\n",
"4 -20.0\n",
" ... \n",
"65 -5150.0\n",
"66 -5400.0\n",
"67 -5650.0\n",
"68 -6000.0\n",
"69 -6250.0\n",
"Name: lev, Length: 70, dtype: float64"
]
},
"execution_count": 52,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"file_content.lev"
]
},
{
"cell_type": "code",
"execution_count": 61,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T03:00:05.718217Z",
"start_time": "2021-01-15T03:00:05.711478Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> unknown </td> <td> unknown </td></tr>\n",
" <tr><th> Shape </th><td> (nan, 3) </td> <td> (nan, 3) </td></tr>\n",
" <tr><th> Count </th><td> 27 Tasks </td><td> 9 Chunks </td></tr>\n",
" <tr><th> Type </th><td> int64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"\n",
"</td>\n",
"</tr>\n",
"</table>"
],
"text/plain": [
"dask.array<sub, shape=(nan, 3), dtype=int64, chunksize=(nan, 3), chunktype=numpy.ndarray>"
]
},
"execution_count": 61,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"elem"
]
},
{
"cell_type": "code",
"execution_count": 67,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T03:03:18.464112Z",
"start_time": "2021-01-15T03:03:09.755148Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-e7260cc1-aca3-4126-b951-79f73bc86e51' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-e7260cc1-aca3-4126-b951-79f73bc86e51' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span class='xr-has-index'>lat</span>: 11538465</li><li><span class='xr-has-index'>lon</span>: 11538465</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-89dc0f9c-12f4-44d5-a48d-39cc9aed2d1b' class='xr-section-summary-in' type='checkbox' checked><label for='section-89dc0f9c-12f4-44d5-a48d-39cc9aed2d1b' class='xr-section-summary' >Coordinates: <span>(2)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>lon</span></div><div class='xr-var-dims'>(lon)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-177.6 -177.7 ... 177.9 178.6</div><input id='attrs-ab07ce19-08ed-459f-89f1-25a817776315' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-ab07ce19-08ed-459f-89f1-25a817776315' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-1c084cbd-ff4d-4c08-93d6-ca562935160d' class='xr-var-data-in' type='checkbox'><label for='data-1c084cbd-ff4d-4c08-93d6-ca562935160d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><pre class='xr-var-data'>array([-177.582001, -177.739975, -177.891302, ..., 177.492762, 177.853453,\n",
" 178.586109])</pre></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>lat</span></div><div class='xr-var-dims'>(lat)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-78.07 -77.82 ... -77.92 -77.79</div><input id='attrs-c807ac56-d218-40dc-960d-627da724412b' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-c807ac56-d218-40dc-960d-627da724412b' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-95ec473d-9312-477c-babe-cefd4ee6eb15' class='xr-var-data-in' type='checkbox'><label for='data-95ec473d-9312-477c-babe-cefd4ee6eb15' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><pre class='xr-var-data'>array([-78.069905, -77.817493, -77.557368, ..., -77.705986, -77.918625,\n",
" -77.787909])</pre></li></ul></div></li><li class='xr-section-item'><input id='section-83448852-4e93-46c6-bc3c-fde19a2364d7' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-83448852-4e93-46c6-bc3c-fde19a2364d7' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-482e6913-464e-4f7b-a8fd-92f71746aac1' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-482e6913-464e-4f7b-a8fd-92f71746aac1' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (lat: 11538465, lon: 11538465)\n",
"Coordinates:\n",
" * lon (lon) float64 -177.6 -177.7 -177.9 -179.0 ... 177.5 177.9 178.6\n",
" * lat (lat) float64 -78.07 -77.82 -77.56 -77.45 ... -77.71 -77.92 -77.79\n",
"Data variables:\n",
" *empty*"
]
},
"execution_count": 67,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.Dataset(coords={'lon':df.x,'lat':df.y})"
]
},
{
"cell_type": "code",
"execution_count": 75,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T03:06:35.530725Z",
"start_time": "2021-01-15T03:06:35.518298Z"
}
},
"outputs": [],
"source": [
"lo=xr.DataArray({'lon':df.x.values})\n",
"la=xr.DataArray({'lat':df.y.values})"
]
},
{
"cell_type": "code",
"execution_count": 96,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T15:46:55.431802Z",
"start_time": "2021-01-15T15:46:48.269694Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-023ffa2c-692f-4628-b35e-1cd456a20a7f' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-023ffa2c-692f-4628-b35e-1cd456a20a7f' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nod2</span>: 11538465</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-719288fc-f4bb-484f-b673-33809949b90e' class='xr-section-summary-in' type='checkbox' checked><label for='section-719288fc-f4bb-484f-b673-33809949b90e' class='xr-section-summary' >Coordinates: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-177.6 -177.7 ... 177.9 178.6</div><input id='attrs-dd451fb3-9cad-4d5f-8410-c2942e1634ff' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-dd451fb3-9cad-4d5f-8410-c2942e1634ff' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-908a01d9-48e6-4bb6-bc7c-1e2d339b915e' class='xr-var-data-in' type='checkbox'><label for='data-908a01d9-48e6-4bb6-bc7c-1e2d339b915e' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><pre class='xr-var-data'>array([-177.5820009 , -177.73997518, -177.89130206, ..., 177.49276208,\n",
" 177.85345314, 178.58610874])</pre></li></ul></div></li><li class='xr-section-item'><input id='section-314ec0fb-579a-4811-a28b-c48b510049fd' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-314ec0fb-579a-4811-a28b-c48b510049fd' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-cf80b10e-d90f-42c5-b987-56b18d43e487' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-cf80b10e-d90f-42c5-b987-56b18d43e487' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nod2: 11538465)\n",
"Coordinates:\n",
" lon (nod2) float64 -177.6 -177.7 -177.9 -179.0 ... 177.5 177.9 178.6\n",
"Dimensions without coordinates: nod2\n",
"Data variables:\n",
" *empty*"
]
},
"execution_count": 96,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.Dataset(coords={'lon':('nod2',xr.DataArray(df.x.to_dask_array()))}) "
]
},
{
"cell_type": "code",
"execution_count": 93,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T03:16:26.222504Z",
"start_time": "2021-01-15T03:16:21.539259Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-9e70c8f5-9483-45e3-95bb-6d090c41a0b6' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-9e70c8f5-9483-45e3-95bb-6d090c41a0b6' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span class='xr-has-index'>lon</span>: 11538465</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-e242505d-3dbe-47e3-b905-383b444b4eed' class='xr-section-summary-in' type='checkbox' checked><label for='section-e242505d-3dbe-47e3-b905-383b444b4eed' class='xr-section-summary' >Coordinates: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>lon</span></div><div class='xr-var-dims'>(lon)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-177.6 -177.7 ... 177.9 178.6</div><input id='attrs-9897214f-499f-418b-a9a9-5128bff90ea7' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-9897214f-499f-418b-a9a9-5128bff90ea7' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-f0c5844f-eb73-499a-bdde-1a0fc965c220' class='xr-var-data-in' type='checkbox'><label for='data-f0c5844f-eb73-499a-bdde-1a0fc965c220' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><pre class='xr-var-data'>array([-177.582001, -177.739975, -177.891302, ..., 177.492762, 177.853453,\n",
" 178.586109])</pre></li></ul></div></li><li class='xr-section-item'><input id='section-dda3dd47-6fa0-46be-9ffa-30722188d4ff' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-dda3dd47-6fa0-46be-9ffa-30722188d4ff' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-2579d485-89e5-4b5d-943e-f4e59b39728d' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-2579d485-89e5-4b5d-943e-f4e59b39728d' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (lon: 11538465)\n",
"Coordinates:\n",
" * lon (lon) float64 -177.6 -177.7 -177.9 -179.0 ... 177.5 177.9 178.6\n",
"Data variables:\n",
" *empty*"
]
},
"execution_count": 93,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.Dataset(coords={'lon':df.x.to_dask_array()}) # this loads all values"
]
},
{
"cell_type": "code",
"execution_count": 101,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T16:12:41.050338Z",
"start_time": "2021-01-15T16:12:37.897542Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 369.23 MB </td> <td> 42.83 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465, 4) </td> <td> (1338312, 4) </td></tr>\n",
" <tr><th> Count </th><td> 18 Tasks </td><td> 9 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"75\" height=\"170\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"25\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"13\" x2=\"25\" y2=\"13\" />\n",
" <line x1=\"0\" y1=\"26\" x2=\"25\" y2=\"26\" />\n",
" <line x1=\"0\" y1=\"40\" x2=\"25\" y2=\"40\" />\n",
" <line x1=\"0\" y1=\"53\" x2=\"25\" y2=\"53\" />\n",
" <line x1=\"0\" y1=\"67\" x2=\"25\" y2=\"67\" />\n",
" <line x1=\"0\" y1=\"81\" x2=\"25\" y2=\"81\" />\n",
" <line x1=\"0\" y1=\"95\" x2=\"25\" y2=\"95\" />\n",
" <line x1=\"0\" y1=\"108\" x2=\"25\" y2=\"108\" />\n",
" <line x1=\"0\" y1=\"120\" x2=\"25\" y2=\"120\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"120\" style=\"stroke-width:2\" />\n",
" <line x1=\"25\" y1=\"0\" x2=\"25\" y2=\"120\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 25.412617,0.000000 25.412617,120.000000 0.000000,120.000000\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"12.706308\" y=\"140.000000\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >4</text>\n",
" <text x=\"45.412617\" y=\"60.000000\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(-90,45.412617,60.000000)\">11538465</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table>"
],
"text/plain": [
"dask.array<values, shape=(11538465, 4), dtype=float64, chunksize=(1338312, 4), chunktype=numpy.ndarray>"
]
},
"execution_count": 101,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"df.x.to_dask_array(lengths=True)"
]
},
{
"cell_type": "code",
"execution_count": 102,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T16:13:29.462484Z",
"start_time": "2021-01-15T16:13:20.223350Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-670670a7-4d3b-4ed6-a33a-aeedfeea71d7' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-670670a7-4d3b-4ed6-a33a-aeedfeea71d7' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span class='xr-has-index'>lon</span>: 11538465</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-32e5daba-95db-4061-8d4d-0dc27acc6796' class='xr-section-summary-in' type='checkbox' checked><label for='section-32e5daba-95db-4061-8d4d-0dc27acc6796' class='xr-section-summary' >Coordinates: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>lon</span></div><div class='xr-var-dims'>(lon)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-177.6 -177.7 ... 177.9 178.6</div><input id='attrs-1ab0fbce-8665-4537-85da-d993532df638' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-1ab0fbce-8665-4537-85da-d993532df638' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-e6ceda60-ca40-427e-a54e-e8f7a472d198' class='xr-var-data-in' type='checkbox'><label for='data-e6ceda60-ca40-427e-a54e-e8f7a472d198' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><pre class='xr-var-data'>array([-177.582001, -177.739975, -177.891302, ..., 177.492762, 177.853453,\n",
" 178.586109])</pre></li></ul></div></li><li class='xr-section-item'><input id='section-0d259638-38c5-46b9-ba49-7e516d52cc4a' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-0d259638-38c5-46b9-ba49-7e516d52cc4a' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-308f7cef-7cf2-4aec-b5cc-5ca8e13c80ec' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-308f7cef-7cf2-4aec-b5cc-5ca8e13c80ec' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (lon: 11538465)\n",
"Coordinates:\n",
" * lon (lon) float64 -177.6 -177.7 -177.9 -179.0 ... 177.5 177.9 178.6\n",
"Data variables:\n",
" *empty*"
]
},
"execution_count": 102,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.Dataset(coords={'lon':df.x.to_dask_array(lengths=True)}) # this loads all values"
]
},
{
"cell_type": "code",
"execution_count": 106,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T16:15:27.194318Z",
"start_time": "2021-01-15T16:15:24.691783Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.DataArray</div><div class='xr-array-name'>'values-e050bf15a750c4592d81d3a60166c0ac'</div><ul class='xr-dim-list'><li><span>nod2</span>: 11538465</li></ul></div><ul class='xr-sections'><li class='xr-section-item'><div class='xr-array-wrap'><input id='section-6077fc3f-73ae-4c88-bd1c-9e50cce11e27' class='xr-array-in' type='checkbox' ><label for='section-6077fc3f-73ae-4c88-bd1c-9e50cce11e27' title='Show/hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-array-preview xr-preview'><span>dask.array&lt;chunksize=(1302015,), meta=np.ndarray&gt;</span></div><pre class='xr-array-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 92.31 MB </td> <td> 10.71 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465,) </td> <td> (1338312,) </td></tr>\n",
" <tr><th> Count </th><td> 27 Tasks </td><td> 9 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"170\" height=\"75\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"120\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"25\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"25\" style=\"stroke-width:2\" />\n",
" <line x1=\"13\" y1=\"0\" x2=\"13\" y2=\"25\" />\n",
" <line x1=\"26\" y1=\"0\" x2=\"26\" y2=\"25\" />\n",
" <line x1=\"40\" y1=\"0\" x2=\"40\" y2=\"25\" />\n",
" <line x1=\"53\" y1=\"0\" x2=\"53\" y2=\"25\" />\n",
" <line x1=\"67\" y1=\"0\" x2=\"67\" y2=\"25\" />\n",
" <line x1=\"81\" y1=\"0\" x2=\"81\" y2=\"25\" />\n",
" <line x1=\"95\" y1=\"0\" x2=\"95\" y2=\"25\" />\n",
" <line x1=\"108\" y1=\"0\" x2=\"108\" y2=\"25\" />\n",
" <line x1=\"120\" y1=\"0\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 120.000000,0.000000 120.000000,25.412617 0.000000,25.412617\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"60.000000\" y=\"45.412617\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >11538465</text>\n",
" <text x=\"140.000000\" y=\"12.706308\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(0,140.000000,12.706308)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></div></li><li class='xr-section-item'><input id='section-c55b25f8-eb8f-4410-8ca1-d66126941c0c' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-c55b25f8-eb8f-4410-8ca1-d66126941c0c' class='xr-section-summary' title='Expand/collapse section'>Coordinates: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-866ce389-b1a7-4e19-afb8-fbea1a55ee3c' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-866ce389-b1a7-4e19-afb8-fbea1a55ee3c' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.DataArray 'values-e050bf15a750c4592d81d3a60166c0ac' (nod2: 11538465)>\n",
"dask.array<values, shape=(11538465,), dtype=float64, chunksize=(1338312,), chunktype=numpy.ndarray>\n",
"Dimensions without coordinates: nod2"
]
},
"execution_count": 106,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.DataArray(df.x.to_dask_array(lengths=True), dims='nod2')"
]
},
{
"cell_type": "code",
"execution_count": 107,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T16:16:09.634815Z",
"start_time": "2021-01-15T16:16:06.352593Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-816a40cb-19b6-4511-b425-f804379f9c46' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-816a40cb-19b6-4511-b425-f804379f9c46' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nod2</span>: 11538465</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-14f11bfb-d87a-43b8-8a4b-2ba7407e30f7' class='xr-section-summary-in' type='checkbox' checked><label for='section-14f11bfb-d87a-43b8-8a4b-2ba7407e30f7' class='xr-section-summary' >Coordinates: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>dask.array&lt;chunksize=(1302015,), meta=np.ndarray&gt;</div><input id='attrs-a9ff6ed4-6302-49b5-870f-f769842276ac' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-a9ff6ed4-6302-49b5-870f-f769842276ac' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-92eec5c3-4bc4-4959-81f9-b01bb4bbb095' class='xr-var-data-in' type='checkbox'><label for='data-92eec5c3-4bc4-4959-81f9-b01bb4bbb095' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><pre class='xr-var-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 92.31 MB </td> <td> 10.71 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465,) </td> <td> (1338312,) </td></tr>\n",
" <tr><th> Count </th><td> 27 Tasks </td><td> 9 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"170\" height=\"75\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"120\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"25\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"25\" style=\"stroke-width:2\" />\n",
" <line x1=\"13\" y1=\"0\" x2=\"13\" y2=\"25\" />\n",
" <line x1=\"26\" y1=\"0\" x2=\"26\" y2=\"25\" />\n",
" <line x1=\"40\" y1=\"0\" x2=\"40\" y2=\"25\" />\n",
" <line x1=\"53\" y1=\"0\" x2=\"53\" y2=\"25\" />\n",
" <line x1=\"67\" y1=\"0\" x2=\"67\" y2=\"25\" />\n",
" <line x1=\"81\" y1=\"0\" x2=\"81\" y2=\"25\" />\n",
" <line x1=\"95\" y1=\"0\" x2=\"95\" y2=\"25\" />\n",
" <line x1=\"108\" y1=\"0\" x2=\"108\" y2=\"25\" />\n",
" <line x1=\"120\" y1=\"0\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 120.000000,0.000000 120.000000,25.412617 0.000000,25.412617\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"60.000000\" y=\"45.412617\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >11538465</text>\n",
" <text x=\"140.000000\" y=\"12.706308\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(0,140.000000,12.706308)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></li></ul></div></li><li class='xr-section-item'><input id='section-a5be5c2a-c7d0-4ebe-88b1-c55f29606c96' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-a5be5c2a-c7d0-4ebe-88b1-c55f29606c96' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-374a44e8-55a7-4b60-8829-d12db98447a9' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-374a44e8-55a7-4b60-8829-d12db98447a9' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nod2: 11538465)\n",
"Coordinates:\n",
" lon (nod2) float64 dask.array<chunksize=(1302015,), meta=np.ndarray>\n",
"Dimensions without coordinates: nod2\n",
"Data variables:\n",
" *empty*"
]
},
"execution_count": 107,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.Dataset(coords={'lon':xr.DataArray(df.x.to_dask_array(lengths=True), dims='nod2')}) # this loads all values"
]
},
{
"cell_type": "code",
"execution_count": 120,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T16:46:20.599610Z",
"start_time": "2021-01-15T16:46:20.582648Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.DataArray</div><div class='xr-array-name'>'values-e050bf15a750c4592d81d3a60166c0ac'</div><ul class='xr-dim-list'><li><span>nod2</span>: 11538465</li></ul></div><ul class='xr-sections'><li class='xr-section-item'><div class='xr-array-wrap'><input id='section-bdb781c6-74c3-4d13-9580-71a314209228' class='xr-array-in' type='checkbox' ><label for='section-bdb781c6-74c3-4d13-9580-71a314209228' title='Show/hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-array-preview xr-preview'><span>dask.array&lt;chunksize=(1302015,), meta=np.ndarray&gt;</span></div><pre class='xr-array-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 92.31 MB </td> <td> 10.42 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465,) </td> <td> (1302015,) </td></tr>\n",
" <tr><th> Count </th><td> 27 Tasks </td><td> 9 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"170\" height=\"75\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"120\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"25\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"25\" style=\"stroke-width:2\" />\n",
" <line x1=\"13\" y1=\"0\" x2=\"13\" y2=\"25\" />\n",
" <line x1=\"27\" y1=\"0\" x2=\"27\" y2=\"25\" />\n",
" <line x1=\"40\" y1=\"0\" x2=\"40\" y2=\"25\" />\n",
" <line x1=\"54\" y1=\"0\" x2=\"54\" y2=\"25\" />\n",
" <line x1=\"67\" y1=\"0\" x2=\"67\" y2=\"25\" />\n",
" <line x1=\"81\" y1=\"0\" x2=\"81\" y2=\"25\" />\n",
" <line x1=\"94\" y1=\"0\" x2=\"94\" y2=\"25\" />\n",
" <line x1=\"108\" y1=\"0\" x2=\"108\" y2=\"25\" />\n",
" <line x1=\"120\" y1=\"0\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 120.000000,0.000000 120.000000,25.412617 0.000000,25.412617\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"60.000000\" y=\"45.412617\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >11538465</text>\n",
" <text x=\"140.000000\" y=\"12.706308\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(0,140.000000,12.706308)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></div></li><li class='xr-section-item'><input id='section-3348197d-b713-446d-a567-557d3c633806' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-3348197d-b713-446d-a567-557d3c633806' class='xr-section-summary' title='Expand/collapse section'>Coordinates: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-9d0c0dc5-62c0-4be4-8fa3-dfa4aae0053d' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-9d0c0dc5-62c0-4be4-8fa3-dfa4aae0053d' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.DataArray 'values-e050bf15a750c4592d81d3a60166c0ac' (nod2: 11538465)>\n",
"dask.array<values, shape=(11538465,), dtype=float64, chunksize=(1302015,), chunktype=numpy.ndarray>\n",
"Dimensions without coordinates: nod2"
]
},
"execution_count": 120,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"xr.DataArray(df.x.to_dask_array(lengths=[*[1302015]*8, 1122345 ]), dims='nod2')"
]
},
{
"cell_type": "code",
"execution_count": 121,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T17:12:57.322334Z",
"start_time": "2021-01-15T17:12:57.302702Z"
}
},
"outputs": [],
"source": [
"dx=xr.DataArray(df.x.to_dask_array(lengths=[*[1302015]*8, 1122345 ]), dims='nod2')\n"
]
},
{
"cell_type": "code",
"execution_count": 123,
"metadata": {
"ExecuteTime": {
"end_time": "2021-01-15T17:13:34.880500Z",
"start_time": "2021-01-15T17:13:34.867248Z"
}
},
"outputs": [
{
"data": {
"text/html": [
"<div><svg style=\"position: absolute; width: 0; height: 0; overflow: hidden\">\n",
"<defs>\n",
"<symbol id=\"icon-database\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide data repr</title>\n",
"<path d=\"M16 0c-8.837 0-16 2.239-16 5v4c0 2.761 7.163 5 16 5s16-2.239 16-5v-4c0-2.761-7.163-5-16-5z\"></path>\n",
"<path d=\"M16 17c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"<path d=\"M16 26c-8.837 0-16-2.239-16-5v6c0 2.761 7.163 5 16 5s16-2.239 16-5v-6c0 2.761-7.163 5-16 5z\"></path>\n",
"</symbol>\n",
"<symbol id=\"icon-file-text2\" viewBox=\"0 0 32 32\">\n",
"<title>Show/Hide attributes</title>\n",
"<path d=\"M28.681 7.159c-0.694-0.947-1.662-2.053-2.724-3.116s-2.169-2.030-3.116-2.724c-1.612-1.182-2.393-1.319-2.841-1.319h-15.5c-1.378 0-2.5 1.121-2.5 2.5v27c0 1.378 1.122 2.5 2.5 2.5h23c1.378 0 2.5-1.122 2.5-2.5v-19.5c0-0.448-0.137-1.23-1.319-2.841zM24.543 5.457c0.959 0.959 1.712 1.825 2.268 2.543h-4.811v-4.811c0.718 0.556 1.584 1.309 2.543 2.268zM28 29.5c0 0.271-0.229 0.5-0.5 0.5h-23c-0.271 0-0.5-0.229-0.5-0.5v-27c0-0.271 0.229-0.5 0.5-0.5 0 0 15.499-0 15.5 0v7c0 0.552 0.448 1 1 1h7v19.5z\"></path>\n",
"<path d=\"M23 26h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 22h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"<path d=\"M23 18h-14c-0.552 0-1-0.448-1-1s0.448-1 1-1h14c0.552 0 1 0.448 1 1s-0.448 1-1 1z\"></path>\n",
"</symbol>\n",
"</defs>\n",
"</svg>\n",
"<style>/* CSS stylesheet for displaying xarray objects in jupyterlab.\n",
" *\n",
" */\n",
"\n",
":root {\n",
" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n",
" --xr-font-color2: var(--jp-content-font-color2, rgba(0, 0, 0, 0.54));\n",
" --xr-font-color3: var(--jp-content-font-color3, rgba(0, 0, 0, 0.38));\n",
" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n",
" --xr-disabled-color: var(--jp-layout-color3, #bdbdbd);\n",
" --xr-background-color: var(--jp-layout-color0, white);\n",
" --xr-background-color-row-even: var(--jp-layout-color1, white);\n",
" --xr-background-color-row-odd: var(--jp-layout-color2, #eeeeee);\n",
"}\n",
"\n",
".xr-wrap {\n",
" min-width: 300px;\n",
" max-width: 700px;\n",
"}\n",
"\n",
".xr-header {\n",
" padding-top: 6px;\n",
" padding-bottom: 6px;\n",
" margin-bottom: 4px;\n",
" border-bottom: solid 1px var(--xr-border-color);\n",
"}\n",
"\n",
".xr-header > div,\n",
".xr-header > ul {\n",
" display: inline;\n",
" margin-top: 0;\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-obj-type,\n",
".xr-array-name {\n",
" margin-left: 2px;\n",
" margin-right: 10px;\n",
"}\n",
"\n",
".xr-obj-type {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-sections {\n",
" padding-left: 0 !important;\n",
" display: grid;\n",
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
"}\n",
"\n",
".xr-section-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-section-item input {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-item input + label {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label {\n",
" cursor: pointer;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-item input:enabled + label:hover {\n",
" color: var(--xr-font-color0);\n",
"}\n",
"\n",
".xr-section-summary {\n",
" grid-column: 1;\n",
" color: var(--xr-font-color2);\n",
" font-weight: 500;\n",
"}\n",
"\n",
".xr-section-summary > span {\n",
" display: inline-block;\n",
" padding-left: 0.5em;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label {\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-section-summary-in + label:before {\n",
" display: inline-block;\n",
" content: '►';\n",
" font-size: 11px;\n",
" width: 15px;\n",
" text-align: center;\n",
"}\n",
"\n",
".xr-section-summary-in:disabled + label:before {\n",
" color: var(--xr-disabled-color);\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label:before {\n",
" content: '▼';\n",
"}\n",
"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt, dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><div class='xr-wrap'><div class='xr-header'><div class='xr-obj-type'>xarray.DataArray</div><div class='xr-array-name'>'values-e050bf15a750c4592d81d3a60166c0ac'</div><ul class='xr-dim-list'><li><span>nod2</span>: 11538465</li></ul></div><ul class='xr-sections'><li class='xr-section-item'><div class='xr-array-wrap'><input id='section-9050e88c-c52c-4c3a-84ba-fe90ef51798f' class='xr-array-in' type='checkbox' ><label for='section-9050e88c-c52c-4c3a-84ba-fe90ef51798f' title='Show/hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-array-preview xr-preview'><span>dask.array&lt;chunksize=(1302015,), meta=np.ndarray&gt;</span></div><pre class='xr-array-data'><table>\n",
"<tr>\n",
"<td>\n",
"<table>\n",
" <thead>\n",
" <tr><td> </td><th> Array </th><th> Chunk </th></tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr><th> Bytes </th><td> 92.31 MB </td> <td> 10.42 MB </td></tr>\n",
" <tr><th> Shape </th><td> (11538465,) </td> <td> (1302015,) </td></tr>\n",
" <tr><th> Count </th><td> 27 Tasks </td><td> 9 Chunks </td></tr>\n",
" <tr><th> Type </th><td> float64 </td><td> numpy.ndarray </td></tr>\n",
" </tbody>\n",
"</table>\n",
"</td>\n",
"<td>\n",
"<svg width=\"170\" height=\"75\" style=\"stroke:rgb(0,0,0);stroke-width:1\" >\n",
"\n",
" <!-- Horizontal lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"120\" y2=\"0\" style=\"stroke-width:2\" />\n",
" <line x1=\"0\" y1=\"25\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Vertical lines -->\n",
" <line x1=\"0\" y1=\"0\" x2=\"0\" y2=\"25\" style=\"stroke-width:2\" />\n",
" <line x1=\"13\" y1=\"0\" x2=\"13\" y2=\"25\" />\n",
" <line x1=\"27\" y1=\"0\" x2=\"27\" y2=\"25\" />\n",
" <line x1=\"40\" y1=\"0\" x2=\"40\" y2=\"25\" />\n",
" <line x1=\"54\" y1=\"0\" x2=\"54\" y2=\"25\" />\n",
" <line x1=\"67\" y1=\"0\" x2=\"67\" y2=\"25\" />\n",
" <line x1=\"81\" y1=\"0\" x2=\"81\" y2=\"25\" />\n",
" <line x1=\"94\" y1=\"0\" x2=\"94\" y2=\"25\" />\n",
" <line x1=\"108\" y1=\"0\" x2=\"108\" y2=\"25\" />\n",
" <line x1=\"120\" y1=\"0\" x2=\"120\" y2=\"25\" style=\"stroke-width:2\" />\n",
"\n",
" <!-- Colored Rectangle -->\n",
" <polygon points=\"0.000000,0.000000 120.000000,0.000000 120.000000,25.412617 0.000000,25.412617\" style=\"fill:#ECB172A0;stroke-width:0\"/>\n",
"\n",
" <!-- Text -->\n",
" <text x=\"60.000000\" y=\"45.412617\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" >11538465</text>\n",
" <text x=\"140.000000\" y=\"12.706308\" font-size=\"1.0rem\" font-weight=\"100\" text-anchor=\"middle\" transform=\"rotate(0,140.000000,12.706308)\">1</text>\n",
"</svg>\n",
"</td>\n",
"</tr>\n",
"</table></pre></div></li><li class='xr-section-item'><input id='section-a2633250-c356-4183-9fa3-dfe08f8e9663' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-a2633250-c356-4183-9fa3-dfe08f8e9663' class='xr-section-summary' title='Expand/collapse section'>Coordinates: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-7d595c49-8c5c-4357-bc28-a7940ecf933f' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-7d595c49-8c5c-4357-bc28-a7940ecf933f' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.DataArray 'values-e050bf15a750c4592d81d3a60166c0ac' (nod2: 11538465)>\n",
"dask.array<values, shape=(11538465,), dtype=float64, chunksize=(1302015,), chunktype=numpy.ndarray>\n",
"Dimensions without coordinates: nod2"
]
},
"execution_count": 123,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"dask.persist()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.6"
},
"toc": {
"base_numbering": 1,
"nav_menu": {},
"number_sections": false,
"sideBar": true,
"skip_h1_title": false,
"title_cell": "Table of Contents",
"title_sidebar": "Contents",
"toc_cell": false,
"toc_position": {},
"toc_section_display": true,
"toc_window_display": false
}
},
"nbformat": 4,
"nbformat_minor": 4
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment