Tyler Benster tbenst
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| Installing eGrabber Package... | |
| Compiling for x86_64 kernel 5.4.0... | |
| linux-vdso.so.1 (0x00007ffc493b7000) | |
| libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f1ec18e7000) | |
| /lib64/ld-linux-x86-64.so.2 (0x00007f1ec1af9000) | |
| cp: cannot stat '*': No such file or directory | |
| cp: cannot stat 'shell/egrabber.conf': No such file or directory | |
| Installing drivers... | |
| make: getcwd: No such file or directory |
tbenst
/ circus.nix
Created
September 2, 2020 01:34
Build singularity image for spyking circus using hdf5 with MPI support
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| let | |
| nixpkgsSHA = "fc966732c89f9485a1ea1a0f86b2a1bb97db862c"; # 2020-08-18 | |
| pkgs = import (fetchTarball | |
| "https://github.com/NixOS/nixpkgs/archive/${nixpkgsSHA}.tar.gz") { | |
| system = builtins.currentSystem; | |
| overlays = [ (self: super: { | |
| hdf5 = super.hdf5.override { mpi = super.mpich; }; | |
| pythonOverrides = python-self: python-super: { | |
| numpy = python-super.numpy.override { blas = super.mkl; }; | |
tbenst
/ doesnt_work.nix
Created
August 20, 2020 00:24
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| let | |
| nixpkgsSHA = "4fed373652870addb0b0cf809899bd0d49cfaf59"; # 2020-07-18 | |
| pkgs = import (fetchTarball | |
| "https://github.com/tbenst/nixpkgs/archive/${nixpkgsSHA}.tar.gz") { | |
| system = builtins.currentSystem; | |
| overlays = [ (self: super: { | |
| hdf5 = super.hdf5.override { mpi = super.mpich; }; | |
| pythonOverrides = python-self: python-super: { | |
| mpi4py = python-super.mpi4py.override { | |
| mpi = super.mpich; |
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| let | |
| nixpkgsSHA = "4fed373652870addb0b0cf809899bd0d49cfaf59"; # 2020-07-18 | |
| pkgs = import (fetchTarball | |
| "https://github.com/tbenst/nixpkgs/archive/${nixpkgsSHA}.tar.gz") { | |
| system = builtins.currentSystem; | |
| overlays = [ (self: super: rec { | |
| hdf5 = super.hdf5.override { mpi = super.mpich; }; | |
| pythonOverrides = python-self: python-super: rec { | |
| h5py = python-super.h5py.override { | |
| mpi4py = mpi4py; |
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| let | |
| nixpkgsSHA = "4fed373652870addb0b0cf809899bd0d49cfaf59"; # 2020-07-18 | |
| pkgs = import (fetchTarball | |
| "https://github.com/tbenst/nixpkgs/archive/${nixpkgsSHA}.tar.gz") { | |
| system = builtins.currentSystem; | |
| overlays = [ (self: super: rec { | |
| hdf5 = super.hdf5.override { mpi = super.mpich; }; | |
| pythonOverrides = python-self: python-super: { | |
| h5py = python-super.h5py.override { | |
| mpi4py = mpi4py; |
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| let | |
| nixpkgsSHA = "4fed373652870addb0b0cf809899bd0d49cfaf59"; # 2020-07-18 | |
| pkgs = import (fetchTarball | |
| "https://github.com/tbenst/nixpkgs/archive/${nixpkgsSHA}.tar.gz") { | |
| system = builtins.currentSystem; | |
| overlays = [ (self: super: rec { | |
| hdf5 = super.hdf5.override { mpi = super.mpich; }; | |
| pythonOverrides = python-self: python-super: { | |
| mpi4py = python-super.mpi4py.override { | |
| mpi = super.mpich; |
tbenst
/ gist:21e7933684cfd07a33a57e8f66ab1c97
Created
August 19, 2020 23:59
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| let | |
| nixpkgsSHA = "3cb7a1cffe9bb43ec51a7707959edbebdc65ec7a"; # 2020-07-18 | |
| pkgs = import (fetchTarball | |
| "https://github.com/tbenst/nixpkgs/archive/${nixpkgsSHA}.tar.gz") { | |
| system = builtins.currentSystem; | |
| overlays = [ (self: super: { | |
| hdf5 = super.hdf5.override { mpi = super.mpich; }; | |
| })]; | |
| }; | |
| in |
tbenst
/ minimal_stream.py
Last active
August 18, 2020 05:36
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| #%% | |
| from ctypes import c_int32, c_int16 | |
| from pathlib import Path | |
| import win32com.client | |
| import numpy as np | |
| import os | |
| import matplotlib.pyplot as plt | |
| import matplotlib | |
| from time import sleep, time_ns | |
| #%% |
tbenst
/ Julia-fhs.nix
Created
August 13, 2020 00:43
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| { pkgs ? import <nixpkgs> {}}: | |
| let | |
| jupyterPort = pkgs.config.jupyterPort; | |
| fhs = pkgs.buildFHSUserEnv { | |
| name = "julia-fhs"; | |
| targetPkgs = pkgs: with pkgs; | |
| [ | |
| git | |
| gitRepo |
We can make this file beautiful and searchable if this error is corrected: It looks like row 8 should actually have 9 columns, instead of 1. in line 7.
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| scorer,mattwright,mattwright,mattwright,mattwright,mattwright,mattwright,mattwright,mattwright | |
| bodyparts,bodypart1,bodypart1,bodypart2,bodypart2,bodypart3,bodypart3,objectA,objectA | |
| coords,x,y,x,y,x,y,x,y | |
| labeled-data/notag.vglut3.chr2.oft.2.second/img00268.png,204.33774872086414,87.11378055713476,194.02279704377486,69.92219442865257,180.2695281409892,90.55209778283108,, | |
| labeled-data/notag.vglut3.chr2.oft.2.second/img00316.png,383.13024445707794,288.5991699829449,345.9964184195567,218.4574985787379,196.77345082433206,213.6438544627629,293.7339965889711,153.81713473564525 | |
| labeled-data/notag.vglut3.chr2.oft.2.second/img01141.png,461.5238772029563,178.5730187606595,489.0304150085276,258.3419783968164,466.3375213189313,301.66477544059126,282.04371802160324,286.53617964752704 | |
| labeled-data/notag.vglut3.chr2.oft.2.second/img01234.png,344.62109152927803,358.0531779420125,209.83905628197846,372.4941102899375,198.14877771461065,348.42588971006256,198.14877771461065,342.92458214894833 | |
| labeled-data/notag.vglut3.chr2.oft.2 |