tbrittoborges

import pandas as pd

x = pd.read_html('https://de.wikipedia.org/wiki/Medizinische_Abk%C3%BCrzungen')
x=pd.concat(x)
x.tail()
x.set_index(0)[1]

tbrittoborges

# from https://www.biostars.org/p/272373/#272461
cut -f1,2 genome.fa.fai > genome.size

tbrittoborges

#!/usr/bin/env python
# __author__ = 'tbrittoborges'

import subprocess
import tempfile

import sys
import utils

seqs = utils.fasta_parser('.fasta')

tbrittoborges

# from https://stackoverflow.com/users/2490497/jangorecki
Rscript -e 'install.packages("eulerr", repos="https://cran.rstudio.com")'

tbrittoborges

Places to visit

The castle

Philosophenweg:

A nice walk that you can start from the Old bridge or Bergstraße (Neuenheim). Also check the Neckarwiese, Alte brücke (old bridge) and Hauptstraße (main street)

Botanical Garden Heidelberg:

Although it's winter, the botanical garden has a small greenhouse. The garden is also within the main University Campus, and so offers a good opportunity to check it out.

Käthe Wohlfahrt:

tbrittoborges

SIRV	LexogenSIRVData	exon	2001	2484	.	-	0	gene_id "SIRV1"; transcript_id "SIRV101"; exon_assignment "SIRV101_0";
SIRV	LexogenSIRVData	exon	2001	2484	.	-	0	gene_id "SIRV1"; transcript_id "SIRV103"; exon_assignment "SIRV103_0";
SIRV	LexogenSIRVData	exon	2001	2484	.	-	0	gene_id "SIRV1"; transcript_id "SIRV104"; exon_assignment "SIRV104_0";
SIRV	LexogenSIRVData	exon	2001	2484	.	-	0	gene_id "SIRV1"; transcript_id "SIRV106"; exon_assignment "SIRV106_0";
SIRV	LexogenSIRVData	transcript	2001	11763	.	-	0	gene_id "SIRV1"; transcript_id "SIRV104";
SIRV	LexogenSIRVData	transcript	2001	11786	.	-	0	gene_id "SIRV1"; transcript_id "SIRV101";
SIRV	LexogenSIRVData	transcript	2001	11786	.	-	0	gene_id "SIRV1"; transcript_id "SIRV106";
SIRV	LexogenSIRVData	transcript	2001	11791	.	-	0	gene_id "SIRV1"; transcript_id "SIRV103";
SIRV	LexogenSIRVData	gene	2001	12643	.	-	0	gene_id "SIRV1";
SIRV	LexogenSIRVData	exon	2007	2484	.	-	0	gene_id "SIRV1"; transcript_id "SIRV102"; exon_assignment "SIRV102_0";

tbrittoborges

library(tidyverse)

library(lubridate) # for the days() function
library(fuzzyjoin) # for the fuzzy_left_join() function

climate <- read_tsv('./timetable.csv')
#  date         temperature
#1 2018-11-21   100 
#2 2018-11-22    80 

tbrittoborges

(majiq) tbrittoborges@atlas:/prj/CellRNANetworks/Baltica$ majiq build -h
Traceback (most recent call last):
  File "/home/tbrittoborges/miniconda3/envs/majiq/bin/majiq", line 7, in <module>
    from majiq.run_majiq import main
  File "/home/tbrittoborges/miniconda3/envs/majiq/lib/python3.5/site-packages/majiq/run_majiq.py", line 2, in <module>
    from majiq.src.build import build
  File "majiq/src/build.pyx", line 24, in init majiq.src.build
  File "/home/tbrittoborges/miniconda3/envs/majiq/lib/python3.5/site-packages/voila/api/__init__.py", line 1, in <module>
    from voila.api.matrix_hdf5 import Psi, DeltaPsi, Heterogen
  File "/home/tbrittoborges/miniconda3/envs/majiq/lib/python3.5/site-packages/voila/api/matrix_hdf5.py", line 8, in <module>

tbrittoborges

#!/usr/bin/env python
# coding: utf-8
from pathlib import Path
import os
from itertools import chain
from datetime import datetime
__author__: tbrittoborges
__date__: 05/02/2020

tbrittoborges

#!/usr/bin/env python
# coding: utf-8
from pathlib import Path
import os
from itertools import chain
from datetime import datetime
__author__: tbrittoborges
__date__: 05/02/2020