terrycojones

(elpy-enable)
(pyvenv-workon "37")
(setq elpy-test-runner 'elpy-test-trial-runner)
(setq
 elpy-test-trial-runner-command
 (list (expand-file-name (format "~/.virtualenvs/%s/bin/trial" pyvenv-virtual-env-name)) "--rterrors"))

(when (require 'flycheck nil t)
  (setq elpy-modules (delq 'elpy-module-flymake elpy-modules))
  (add-hook 'elpy-mode-hook 'flycheck-mode))

terrycojones

Request timeout for icmp_seq 56
Request timeout for icmp_seq 57
Request timeout for icmp_seq 58
Request timeout for icmp_seq 59
64 bytes from 173.194.45.240: icmp_seq=43 ttl=42 time=17498.977 ms
64 bytes from 173.194.45.240: icmp_seq=44 ttl=42 time=17338.116 ms
64 bytes from 173.194.45.240: icmp_seq=45 ttl=42 time=16603.952 ms
64 bytes from 173.194.45.240: icmp_seq=47 ttl=42 time=15499.101 ms
64 bytes from 173.194.45.240: icmp_seq=48 ttl=42 time=14698.743 ms
64 bytes from 173.194.45.240: icmp_seq=50 ttl=42 time=13174.529 ms

terrycojones

$ echo $i

$ set i aaaxy
$ echo $i
untrackedfiles
$ echo $FISH_VERSION
2.7.1-1829-g742fde0d

# Whereas:

terrycojones

from gor4 import GOR4

_GOR4 = None

def predictions(sequence):
  global _GOR4
  if _GOR4 is None:
    _GOR4 = GOR4()
  return _GOR4.predict(sequence)['predictions']

terrycojones

"My dear fellow," Burlingame said caustically, "we sit on a blind rock
careening through space; we are all of us rushing headlong to the
grave. Think you the worms will care, when anon they make a meal of
you, whether you spent your moment sighing wigless in your chamber, or
sacked the golden towns of Montezuma? Lookee, the day's nigh spent;
'tis gone careening into time forever. Not a tale's length since we
lined our bowels with dinner, and already they growl for more. We are
dying men Ebenezer: i'faith, there's time for nought but bold
resolves!"

terrycojones

ls summary-proteins-* | \
proteins-to-pathogens.py \
    --format fastq \
    --html \
    --minProteinFraction 0.1 \
    --pathogenType bacterial \
    --proteinFastaFilename $HOME/rdsbt/root/share/ncbi/bacterial-refseq/20180609-bacteria.nonredundant_protein.fasta.gz \
    --pathogenPanelFilename bacteria.png \
    --sampleIndexFilename samples.index \
    --pathogenIndexFilename pathogens.index \

terrycojones

from sklearn.metrics import mutual_info_score
from sklearn.metrics.cluster import entropy

def normalized_information_distance(c1, c2):
    """
    Calculate Normalized Information Distance

    Taken from Vinh, Epps, and Bailey, (2010). Information Theoretic Measures
    for Clusterings Comparison: Variants, Properties, Normalization and
    Correction for Chance, JMLR

terrycojones

[color]
  ui = auto
[color "branch"]
  current = yellow reverse
  local = yellow
  remote = green
[color "diff"]
  meta = yellow bold
  frag = magenta bold
  old = red bold

terrycojones

$ locale
LANG=en_GB.UTF-8
LC_CTYPE="en_GB.UTF-8"
LC_NUMERIC=de_DE.UTF-8
LC_TIME=de_DE.UTF-8
LC_COLLATE="en_GB.UTF-8"
LC_MONETARY=de_DE.UTF-8
LC_MESSAGES="en_GB.UTF-8"
LC_PAPER=de_DE.UTF-8
LC_NAME=de_DE.UTF-8

terrycojones

ExifTool Version Number         : 8.98
File Name                       : tcr6.jpg
Directory                       : /Users/terry/Downloads
File Size                       : 40 kB
File Modification Date/Time     : 2018:01:12 02:41:28+00:00
File Permissions                : rw-rw-rw-
File Type                       : JPEG
MIME Type                       : image/jpeg
JFIF Version                    : 1.02
Resolution Unit                 : None