sheymann

ExportPlot <- function(gplot, filename, width=2, height=1.5) {
    # Export plot in PDF and EPS.
    # Notice that A4: width=11.69, height=8.27
    ggsave(paste(filename, '.pdf', sep=""), gplot, width = width, height = height)
    postscript(file = paste(filename, '.eps', sep=""), width = width, height = height)
    print(gplot)
    dev.off()
    png(file = paste(filename, '_.png', sep=""), width = width * 100, height = height * 100)
    print(gplot)
    dev.off()

tony4d

Download and install p4merge

• Download the perforce visual tool suite from here: http://www.perforce.com/perforce/downloads/index.html
• Copy only the p4merge.app file into your /Applications/ directory

Setup p4merge as a visual mergetool

bhasto

<?xml version="1.0" encoding="utf-8"?>
<Client name="Sony Bravia 2014">
  <Identification>
    <Header name="X-AV-Client-Info" regex=".*KDL-\d{2}[WR][5689]\d{2}B.*" />
    <DeviceDescription>
      <Manufacturer substring="Sony" />
      <FriendlyName regex="KDL-\d{2}[WR][5689]\d{2}B.*" />
    </DeviceDescription>
  </Identification>
  <DeviceDescription>

danielecook

cat file.fa | awk '$0 ~ ">" {print c; c=0;printf substr($0,2,100) "\t"; } $0 !~ ">" {c+=length($0);} END { print c; }'

danielpquinn

/**
 * Get path data for a rounded rectangle. Allows for different radius on each corner.
 * @param  {Number} w   Width of rounded rectangle
 * @param  {Number} h   Height of rounded rectangle
 * @param  {Number} tlr Top left corner radius
 * @param  {Number} trr Top right corner radius
 * @param  {Number} brr Bottom right corner radius
 * @param  {Number} blr Bottom left corner radius
 * @return {String}     Rounded rectangle SVG path data
 */

macmanes

About 12% faster streaming sambamba view/sort than if using samtools..

Going from 50M raw pe reads to a sorted BAM file in 15 minutes is pretty sweet.

samtools 1.2

bwa index -p index bwa.Trinity.fasta

r-brown

# install Homebrew
$ su ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

# show brew commands
$ brew help

# check current user
$ echo $(whoami)

# grant access to the folders

gt3

// source: https://developer.mozilla.org/en-US/docs/Web/API/CustomEvent/CustomEvent
;(function() {
  if (typeof window.CustomEvent === "function") return false

  function CustomEvent(event, params) {
    params = params || { bubbles: false, cancelable: false, detail: undefined }
    var evt = document.createEvent("CustomEvent")
    evt.initCustomEvent(event, params.bubbles, params.cancelable, params.detail)
    return evt
  }

mehmetsefabalik

enable https on your local environment

install mkcert and create certificates

brew install mkcert

mkcert -install