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| //BuildMap export a simple link map from graphviz | |
| func BuildMap(name string, path string) (eMap *ExportMap, err error) { | |
| gr, err := readGraphvizFile(path) | |
| if err != nil { | |
| return nil, err | |
| } | |
| s, err := linkNode(gr) | |
| if err != nil { | |
| return nil, err |
thanhpp
/ dagrun113724022020.json
Last active
September 24, 2020 04:39
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| { | |
| "dag_id": 1, | |
| "dag_run_id": "1-1-0", | |
| "user_id": 1, | |
| "jobs": [ | |
| { | |
| "job_id": "1-1-0-1-0", | |
| "is_boundary": false, | |
| "task_id": "1-0", | |
| "dag_run_id": "1-1-0", |
thanhpp
/ dagrun181326092020.json
Created
September 26, 2020 11:13
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| { | |
| "dag_id": 1, | |
| "dag_run_id": "1-1-0", | |
| "user_id": 1, | |
| "jobs": [ | |
| { | |
| "job_id": "1-1-0-1-0", | |
| "is_boundary": false, | |
| "task_id": "1-0", | |
| "dag_run_id": "1-1-0", |
thanhpp
/ dag203028092020.json
Last active
September 28, 2020 15:32
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| { | |
| "dag_id": 1, | |
| "dag_run_id": "1-1-0", | |
| "user_id": 1, | |
| "jobs": [ | |
| { | |
| "job_id": "1-1-0-1-0", | |
| "is_boundary": false, | |
| "task_id": "1-0", | |
| "dag_run_id": "1-1-0", |
thanhpp
/ dagrun-20200928-2032.json
Last active
September 28, 2020 15:36
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| { | |
| "dag_id": 1, | |
| "dag_run_id": "1-1-0", | |
| "user_id": 1, | |
| "jobs": [ | |
| { | |
| "job_id": "1-1-0-1-0", | |
| "is_boundary": false, | |
| "task_id": "1-0", | |
| "dag_run_id": "1-1-0", |
thanhpp
/ dagrun-20200929-0908.json
Created
September 29, 2020 02:08
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| { | |
| "dag_id": 2, | |
| "dag_run_id": "2-1-0", | |
| "user_id": 1, | |
| "jobs": [ | |
| { | |
| "job_id": "2-1-0-2-0", | |
| "is_boundary": false, | |
| "task_id": "2-0", | |
| "dag_run_id": "2-1-0", |
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| { | |
| "Error": { | |
| "Code": 200, | |
| "Message": "Created DAG" | |
| }, | |
| "Data": { | |
| "dag_id": 1, | |
| "dag_name": "#main", | |
| "user_id": 1, | |
| "tasks": [ |
thanhpp
/ wes_bash.sh
Created
October 5, 2020 13:30
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| out_folder='/home/nguyen/testpackage2/' | |
| data_folder='/home/nguyen/testpackage2/fastq/' | |
| ref_gen='/home/nguyen/ref37/ref37' | |
| ref_fasta='/home/nguyen/ref37/ref37.fa' | |
| ref_dict='/home/nguyen/ref37/ref37.dict' | |
| dbsnp='/home/nguyen/ref37/dbsnp_138.hg19.vcf' | |
| target='/home/nguyen/testpackage2/BED/RB1_padding_100.bed' | |
| NCORE=20 | |
| file1=`find $data_folder -type f \( -iname \*1.fastq \)` | |
| file2=`find $data_folder -type f \( -iname \*2.fastq \)` |
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| Create DAG run with Input: | |
| {{host}}:{{port}}/dag/converttorunwithinputs | |
| Send to scheduler: | |
| {{host}}:{{port}}/job/sendjob | |
| API docs: | |
| https://documenter.getpostman.com/view/10191781/TVRd8B32 |
thanhpp
/ appendstringinterface.go
Created
October 16, 2020 04:13
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| func appendString(strSl []string, data interface{}) (err error) { | |
| switch castedData := data.(type) { | |
| case string: | |
| strSl = append(strSl, castedData) | |
| return nil | |
| case []string: | |
| strSl = append(strSl, castedData...) | |
| return nil | |
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