truatpasteurdotfr

# rozofs export daemon configuration file
layout = 1 ;

volumes = # List of volumes
(   
    {   
        # First volume
        vid = 1 ; # Volume identifier = 1
        cids=     # List of clusters for the volume 1
        (   

truatpasteurdotfr

Contributor: Tru Huynh <tru@pasteur.fr>
Maintainer: Tru Huynh <tru@pasteur.fr>
pkgname=singularity
pkgver=2.1
pkgrel=0
pkgdesc="Singularity: Application containers for Linux"
url="http://singularity.lbl.gov"
arch="x86_64"
license="LNL"
depends=""

truatpasteurdotfr

# contributor: "Tru Huynh <tru@pasteur.fr>"
# Maintainer: "Tru Huynh <tru@pasteur.fr>"

pkgname=piknik
pkgver=0.7
pkgrel=0
pkgdesc="Copy/paste anything over the network"
url="https://github.com/jedisct1/piknik"
arch="x86_64"
license="ISC"

truatpasteurdotfr

# Contributor: "Tru Huynh <tru@pasteur.fr>"
# Maintainer: "Tru Huynh <tru@pasteur.fr>"
pkgname=singularity
pkgver=2.1.2
pkgrel=0
pkgdesc="Singularity: Application containers for Linux"
url="http://singularity.lbl.gov"
arch="x86_64"
license="LNL"
depends=""

truatpasteurdotfr

# Contributor: "Tru Huynh <tru@pasteur.fr>"
# Maintainer: "Tru Huynh <tru@pasteur.fr>"
pkgname=singularity
pkgver=2.2
pkgrel=0
pkgdesc="Singularity: Application containers for Linux"
url="http://singularity.lbl.gov"
arch="x86_64"
license="LNL"
depends=""

truatpasteurdotfr

$ vagrant init centos/7
$ vagrant ssh
[vagrant@localhost ~]$ sudo yum -y update
...
[vagrant@localhost ~]$ reboot
$ vagrant ssh
[vagrant@localhost ~ ]$ sudo yum -y install  gcc make automake autoconf binutils git rpm-build libtool
[vagrant@localhost ~ ]$ git clone https://github.com/gmkurtzer/singularity.git
[vagrant@localhost ~ ]$ cd singularity
[vagrant@localhost singularity]$ ./autogen.sh

truatpasteurdotfr

usage:
0) env.sh adapt to your HPC setup
1) download.sh <- pull the required files except cudnn (license)
2) you need to download the cudnn yourself
3) ./singularity-buildme.sh local-keras-tf-0.12.1-gpu-nvidia-367.57.def

I use external plain files for the setup and post phases: no size limit issue in the singularity def file
if you add more file, don't forget to fix the setup.sh file which copies file into the container.

Modify the ingularity-buildme.sh to meet your local build setup (I build in /dev/shm) 

truatpasteurdotfr

#!/bin/bash
# download the required file

. ./env.sh  || exit 1

if [ ! -f ${working_dir}/${TF_FILE} ]; then
echo "getting ${TF_URL}"
wget -O ${working_dir}/${TF_FILE} ${TF_URL}
fi

truatpasteurdotfr

# Contributor: "Tru Huynh <tru@pasteur.fr>"
# Maintainer: "Tru Huynh <tru@pasteur.fr>"
pkgname=singularity
pkgver=2.2.1
pkgrel=0
pkgdesc="Singularity: Application containers for Linux"
url="http://singularity.lbl.gov"
arch="x86_64"
license="LNL"
depends=""

truatpasteurdotfr

# http://wiki.alpinelinux.org/wiki/Creating_an_Alpine_package

sudo apk add alpine-sdk
#sudo vi /etc/abuild.conf
sudo sed -i -e 's/^#PACKAGER="Your Name <your@email.address>"/PACKAGER="Tru Huynh <tru@pasteur.fr>"/g' /etc/abuild.conf
sudo sed -i -e 's/^#MAINTAINER="$PACKAGER"/MAINTAINER="$PACKAGER"/g' /etc/abuild.conf
sudo addgroup tru abuild
# logout and login to enforce the group modification

sudo mkdir -p /var/cache/distfiles