tsibley

#!/usr/bin/env python3
"""
usage: restart-when-stalled <timeout> <cmd>
       restart-when-stalled --help

Runs <cmd> via the shell ({SHELL}) and monitors its stdout.
If <timeout> seconds pass without output, the <cmd> process
is stopped and <cmd> is restarted.

The <cmd> process is stopped by sending SIGTERM, waiting up

tsibley

const config = JSON.parse(localStorage.getItem("localConfig_v2"));

for (const [teamId, team] of Object.entries(config.teams)) {
    team.is_unified_user_client_enabled = false;
}

localStorage.setItem("localConfig_v2", JSON.stringify(config));

window.location.reload();

tsibley

[
  {
    "settings": {
      "openEditInWindow": false,
      "openEditInWindow.popup": false,
      "windowPosition": {},
      "show-badge": true,
      "disableAll": false,
      "exposeIframes": false,
      "exposeStyleName": false,

tsibley

diff --git a/a.json b/b.json
index 24c633a..5621bff 100644
--- a/a.json
+++ b/b.json
@@ -1,12 +1,12 @@
 {
-  "key": "nextstrain-base-20230717T174555Z-hb0f4dca_0_locked.conda",
+  "key": "nextstrain-base-20230830T164409Z-hb0f4dca_0_locked.conda",
   "value": {
-    "sha256": "6c674e7a7336558cfee106b858e2999b818cd07fd7a83fd11a85f54302028810",

tsibley

diff --git a/aws/cognito/outputs.tf b/aws/cognito/outputs.tf
index db9e9c0d..3e7f55d2 100644
--- a/aws/cognito/outputs.tf
+++ b/aws/cognito/outputs.tf
@@ -2,6 +2,7 @@ output "COGNITO_USER_POOL_ID" {
   value = aws_cognito_user_pool.nextstrain_dot_org.id
 }
 
+# XXX FIXME
 output "COGNITO_BASE_URL" {

tsibley

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 38bec9b..4bf6219 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -65,5 +65,6 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
+      - run: make check
       - run: ./devel/check-readme

tsibley

From be6036a097e3016f2c21e5f54847eb90d12efea1 Mon Sep 17 00:00:00 2001
From: Thomas Sibley <tsibley@fredhutch.org>
Date: Fri, 4 Aug 2023 11:02:22 -0700
Subject: [PATCH] wip! soliloquizing bronchitis's

---
 .github/workflows/pathogen-repo-build.yaml | 68 +++++++++++++++++++++-
 1 file changed, 66 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/pathogen-repo-build.yaml b/.github/workflows/pathogen-repo-build.yaml

tsibley

#!/usr/bin/env python3
"""
Prints the global toctree hierarchy generated as part of a Sphinx build.

Requires that :file:`build/doctrees/environment.pickle` exists.
"""
import pickle
import sphinx.addnodes
from pathlib import Path
from sys import argv

tsibley

diff --git a/.venv/lib/python3.8/site-packages/sphinxcontrib/autoprogram.py b/autoprogram.py
index 635ea82..f63d2d3 100644
--- a/.venv/lib/python3.8/site-packages/sphinxcontrib/autoprogram.py
+++ b/autoprogram.py
@@ -25,8 +25,7 @@ from docutils import nodes
 from docutils.parsers.rst import Directive
 from docutils.parsers.rst.directives import unchanged
 from docutils.statemachine import StringList, ViewList
-from six import exec_
-from six.moves import builtins, reduce

tsibley

name: Run the Nextstrain public builds

on:
  workflow_dispatch:
    inputs:
      dockerImage:
        description: "Specific container image to use for build (will override the default of `nextstrain build`)"
        required: false
        type: string