imagejan

#@ ImagePlus imp
#@ File (style = "directory", label = "Output folder") outputFolder
#@ String (label = "Output file name") filename
#@ double (label = "Spot radius", stepSize=0.1) radius
#@ double (label = "Quality threshold") threshold
#@ int (label = "Max frame gap") frameGap
#@ double (label = "Linking max distance") linkingMax
#@ double (label = "Gap-closing max distance") closingMax

import fiji.plugin.trackmate.Model

rcatlord

## Let’s make a map in R ##

# Setup --------------------------- 
install.packages("sf", "tidyverse", "classInt", "viridis")
library(sf) ; library(tidyverse) ; library(classInt) ; library(viridis)

# Reading spatial data --------------------------- 
sf_gb <- st_read("https://opendata.arcgis.com/datasets/07194e4507ae491488471c84b23a90f2_3.geojson", quiet = TRUE)
glimpse(sf_gb)
st_geometry(sf_gb)

romainGuiet

// ask user to select a folder
dir = getDirectory("Select A folder");
// get the list of files (& folders) in it
fileList = getFileList(dir);
// prepare a folder to output the images
output_dir = dir + File.separator + "output" + File.separator ;
File.makeDirectory(output_dir);


//activate batch mode