Valentin Georgiev valyo
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| Can't locate Moose.pm in @INC (@INC contains: /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at Uni/Scraper.pm line 5. | |
| BEGIN failed--compilation aborted at Uni/Scraper.pm line 5. | |
| Compilation failed in require at ./scrape line 5. | |
| BEGIN failed--compilation aborted at ./scrape line 5. | |
| Can't locate Moose.pm in @INC (@INC contains: /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /Sys |
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| Can't locate Moose.pm in @INC (@INC contains: /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at Uni/Scraper.pm line 5. | |
| BEGIN failed--compilation aborted at Uni/Scraper.pm line 5. | |
| Compilation failed in require at ./scrape line 5. | |
| BEGIN failed--compilation aborted at ./scrape line 5. | |
| Can't locate Moose.pm in @INC (@INC contains: /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /Sys |
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| Couldn't load class (KiokuDB::Backend::DBI) because: Can't locate SQL/Abstract.pm in @INC (@INC contains: /Users/valentingeorgiev/Library/ActivePerl-5.10/lib /usr/local/ActivePerl-5.10/site/lib /usr/local/ActivePerl-5.10/lib .) at /usr/local/ActivePerl-5.10/site/lib/KiokuDB/Backend/DBI.pm line 22. | |
| BEGIN failed--compilation aborted at /usr/local/ActivePerl-5.10/site/lib/KiokuDB/Backend/DBI.pm line 22. | |
| Compilation failed in require at /usr/local/ActivePerl-5.10/site/lib/Class/MOP.pm line 114. | |
| at /usr/local/ActivePerl-5.10/site/lib/Class/MOP.pm line 120 | |
| Class::MOP::__ANON__('Can\'t locate SQL/Abstract.pm in @INC (@INC contains: /Users/...') called at /usr/local/ActivePerl-5.10/site/lib/Try/Tiny.pm line 100 | |
| Try::Tiny::try('CODE(0x82e280)', 'Try::Tiny::Catch=REF(0x82e7f0)') called at /usr/local/ActivePerl-5.10/site/lib/Class/MOP.pm line 125 | |
| Class::MOP::load_first_existing_class('KiokuDB::Backend::DBI') called at /usr/local/ActivePerl-5.10/site/lib/Class/MOP.pm line 137 | |
| Class::MOP::load_class('KiokuDB::Backend |
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| --- | |
| email: | |
| - Research Interests | |
| - Teaching | |
| - s.quideau@iecb.u-bordeaux.fr | |
| name: 'stéphane Quideau ' | |
| Bad file descriptor at -e line 6. | |
| --- | |
| email: |
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| annzi-andersson:Downloads valentingeorgiev$ R -e "install.packages('rj', repos='http://download.walware.de/rj-0.5')" -s | |
| WARNING: ignoring environment value of R_HOME | |
| Warning message: | |
| In getDependencies(pkgs, dependencies, available, lib) : | |
| package ‘rj’ is not available (for R version 2.13.0) |
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| 22:16:00.970 INFO [n.bioclipse.r.business.RBusinessManager] Starting R manager | |
| 22:16:00.971 DEBUG [n.bioclipse.r.business.RBusinessManager] Bioclipse workingdirectory: /Users/valentingeorgiev/bioclipse-workspace | |
| 22:16:00.971 DEBUG [n.bioclipse.r.business.RBusinessManager] R_HOME=null | |
| 22:16:00.972 DEBUG [n.bioclipse.r.business.RBusinessManager] New path: /Library/Frameworks/R.framework/Resources/ | |
| 22:16:00.972 DEBUG [n.bioclipse.r.business.RBusinessManager] R -e ".find.package('rJava')" -s | |
| 22:16:01.568 DEBUG [n.bioclipse.r.business.RBusinessManager] R -e ".find.package('rj')" -s | |
| 22:16:02.179 DEBUG [n.b.ui.ApplicationWorkbenchAdvisor] Skipped updating due to -noupdate argument. | |
| 22:16:02.372 DEBUG [n.bioclipse.r.business.RBusinessManager] Error: Package rj not found. | |
| 22:16:02.373 DEBUG [n.bioclipse.r.business.RBusinessManager] R -e "install.packages('rj', repos='http://download.walware.de/rj-0.5')" -s | |
| 22:16:03.450 ERROR [n.bioclipse.r.business.RBusinessManager] Error finding rj |
valyo
/ gist:1091679
Created
July 19, 2011 08:12
R -e \"install.packages('rj', repos='http://download.walware.de/rj-0.5', type='source')\" -s
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| 10:07:38.018 DEBUG [n.bioclipse.r.business.RBusinessManager] R -e "install.packages('rj', repos='http://download.walware.de/rj-0.5', type='source')" -s | |
| 10:07:56.395 ERROR [net.bioclipse.scripting.JsEnvironment] Failed to get a service: Plug-in "net.bioclipse.r.business" was unable to execute setInitializationData on an instance of "net.bioclipse.r.business.RBusinessManagerFactory". | |
| org.eclipse.core.runtime.CoreException: Plug-in "net.bioclipse.r.business" was unable to execute setInitializationData on an instance of "net.bioclipse.r.business.RBusinessManagerFactory". | |
| at org.eclipse.core.internal.registry.ConfigurationElement.throwException(ConfigurationElement.java:62) ~[org.eclipse.equinox.registry_3.5.0.v20100503.jar:na] | |
| at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:257) ~[org.eclipse.equinox.registry_3.5.0.v20100503.jar:na] | |
| at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle |
valyo
/ gist:1091708
Created
July 19, 2011 08:20
R -e \"install.packages('rj', repos='http://download.walware.de/rj-0.5', type='source')\" -q
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| 10:13:19.166 DEBUG [n.bioclipse.r.business.RBusinessManager] R -e "install.packages('rj', repos='http://download.walware.de/rj-0.5', type='source')" -q | |
| 10:13:37.948 ERROR [net.bioclipse.scripting.JsEnvironment] Failed to get a service: Plug-in "net.bioclipse.r.business" was unable to execute setInitializationData on an instance of "net.bioclipse.r.business.RBusinessManagerFactory". | |
| org.eclipse.core.runtime.CoreException: Plug-in "net.bioclipse.r.business" was unable to execute setInitializationData on an instance of "net.bioclipse.r.business.RBusinessManagerFactory". | |
| at org.eclipse.core.internal.registry.ConfigurationElement.throwException(ConfigurationElement.java:62) ~[org.eclipse.equinox.registry_3.5.0.v20100503.jar:na] | |
| at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:257) ~[org.eclipse.equinox.registry_3.5.0.v20100503.jar:na] | |
| at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle |
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| An internal error occurred during: "Installing Software". | |
| Incompatible profile file name. Expected format is {timestamp}.profile.gz (or {timestamp}.profile) but was ._1311605308970.profile.gz. |
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| An internal error occurred during: "Computing size". | |
| Incompatible profile file name. Expected format is {timestamp}.profile.gz (or {timestamp}.profile) but was ._1311781098280.profile.gz. |
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