Valentin Georgiev valyo
valyo
/ BC Browser error logs
Created
October 21, 2011 11:45
BC 2.5/Ubuntu - hitting the Rich Browser button in the menu
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| Error message inside the browser view: | |
| Could not open the editor: An unexpected exception was thrown. | |
| Details>> | |
| java.lang.NullPointerException | |
| at net.bioclipse.browser.editors.RichBrowserEditor.createPartControl(RichBrowserEditor.java:81) | |
| at org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:670) | |
| at org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:465) | |
| at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:595) | |
| at org.eclipse.ui.internal.PartPane.setVisible(PartPane.java:313) | |
| at org.eclipse.ui.internal.presentations.PresentablePart.setVisible(PresentablePart.java:180) |
valyo
/ BC Browser log (XP and Vista)
Created
October 21, 2011 11:22
BC 2.5/XP(Vista) - hitting the Rich Browser button in the menu
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| Unexpected error - popup window | |
| ### | |
| Error reading url: protocol = http host = null | |
| ... | |
| Reason: | |
| BioclipseException: Error reading url: protocol = http host = null | |
| <<Details | |
| java.lang.reflect.InvocationTargetException | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) |
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| lipseAppLauncher.java:79) | |
| at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.ja | |
| va:369) | |
| at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.ja | |
| va:179) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) | |
| at java.lang.reflect.Method.invoke(Unknown Source) | |
| at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:620) |
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| at net.bioclipse.core.Activator.createVirtualProject(Activator.java:89) | |
| at net.bioclipse.core.Activator$1.runInWorkspace(Activator.java:106) | |
| at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(Internal | |
| WorkspaceJob.java:38) | |
| at org.eclipse.core.internal.jobs.Worker.run(Worker.java:54) | |
| Caused by: org.eclipse.osgi.framework.internal.core.AbstractBundle$BundleStatusE | |
| xception | |
| ... 31 more | |
| Root exception: | |
| org.eclipse.osgi.framework.internal.core.AbstractBundle$BundleStatusException |
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| added to JavaScript environment. | |
| 09:37:28.332 INFO [net.bioclipse.usermanager.UserContainer] File not found: use | |
| rManager.dat, a new will be created when needed | |
| 09:37:28.342 INFO [net.bioclipse.scripting.JsEnvironment] Bioclipse manager: us | |
| erManager added to JavaScript environment. | |
| 09:37:28.462 INFO [net.bioclipse.scripting.JsEnvironment] Bioclipse manager: ws | |
| added to JavaScript environment. | |
| 09:37:28.512 INFO [net.bioclipse.scripting.JsEnvironment] Bioclipse manager: xm | |
| l added to JavaScript environment. | |
| 09:37:28.842 DEBUG [n.bioclipse.r.business.RBusinessManager] [1] "C:/Program Fil |
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| rsync -auxpv --delete --exclude index.php --exclude /Users/valentingeorgiev/Sites/spotrm/application/config/database.php /Users/valentingeorgiev/Sites/spotrm/ d35561@ftp15.space2u.com:/home/d35561/public_html/ | |
| rsync -auxpv --delete --exclude application/config/database.php /Users/valentingeorgiev/Sites/spotrm/ valyo@pele.farmbio.uu.se:~/spotrm/ | |
valyo
/ RBusinessManager.java
Created
September 1, 2011 16:59
RBusinessManager from helpbrowse branch
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| /******************************************************************************* | |
| * Copyright (c) 2011 Egon Willighagen <egon.willighagen@gmail.com> | |
| * Christian Ander <christian.ander@gmail.com> | |
| * | |
| * All rights reserved. This program and the accompanying materials | |
| * are made available under the terms of the Eclipse Public License v1.0 | |
| * which accompanies this distribution, and is available at | |
| * http://www.eclipse.org/legal/epl-v10.html | |
| * | |
| * Contact: http://www.bioclipse.net/ |
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| 09:57:25,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] | |
| 09:57:25,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [bundleresource://119.fwk15735326:1/logback.xml] | |
| 09:57:26,231 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] | |
| 09:57:26,234 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT] | |
| 09:57:26,342 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Pushing component [layout] on top of the object stack. | |
| 09:57:26,403 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - This appender no longer admits a layout as a sub-component, set an encoder instead. | |
| 09:57:26,403 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - To ensure compatibility, wrapping your layout in LayoutWrappingEncoder. | |
| 09:57:26,403 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - See also |
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| 17:18:46,906 |-WARN in ch.qos.logback.core.rolling.RollingFileAppender[FILE] - T | |
| o ensure compatibility, wrapping your layout in LayoutWrappingEncoder. | |
| 17:18:46,906 |-WARN in ch.qos.logback.core.rolling.RollingFileAppender[FILE] - S | |
| ee also http://logback.qos.ch/codes.html#layoutInsteadOfEncoder for details | |
| 17:18:46,906 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA | |
| - Pushing component [rollingPolicy] on top of the object stack. | |
| 17:18:46,921 |-INFO in ch.qos.logback.core.rolling.FixedWindowRollingPolicy@1598 | |
| 3b7 - No compression will be used | |
| 17:18:46,921 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA | |
| - Pushing component [triggeringPolicy] on top of the object stack. |
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| !SESSION 2011-08-01 16:26:44.578 ----------------------------------------------- | |
| eclipse.buildId=2.5.0.201104121213 | |
| java.version=1.6.0_26 | |
| java.vendor=Sun Microsystems Inc. | |
| BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=sv_SE | |
| Framework arguments: -noupdate | |
| Command-line arguments: -os win32 -ws win32 -arch x86 -data @nodefault -noupdate -consolelog | |
| !ENTRY org.eclipse.core.jobs 4 2 2011-08-01 16:28:56.390 | |
| !MESSAGE An internal error occurred during: "Computing size". |