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vanzod / Bonmin-1.8.7-intel-2019a_partial.log
Created August 28, 2019 20:34
(partial) EasyBuild log for failed build of /tmp/eb-dZYWBO/files_pr8855/b/Bonmin/Bonmin-1.8.7-intel-2019a.eb (PR #8855)
== 2019-08-28 15:34:07,963 modules.py:724 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2019-08-28 15:34:07,963 modules.py:724 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2019-08-28 15:34:07,963 modules.py:728 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python --terse list' from /tmp/eb-dZYWBO/tmpnH3dbD/easybuilders
== 2019-08-28 15:34:08,014 modules.py:735 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/Core:1\;/tmp/eb-dZYWBO/tmpNQCyOR/all/MPI/intel/2019.1.144-GCC-8.2.0-2.31.1/impi/2018.4.274:1\;/opt/easybuild/modules/all/MPI/intel/2019.1.144-GCC-8.2.0-2.31.1/impi/2018.4.274:1\;/opt/easybuild/modules/all/Compiler/intel/2019.1.144-GCC-8.2.0-2.31.1:1\;/opt/easybuild/modules/all/Compiler/GCCcore/8.2.0:1\;/opt/easybuild/modules/all:1";
os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/Core:/tmp
@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8854_20191828-UTC-17-18-57.md
Created August 28, 2019 17:18
EasyBuild test report for easyconfigs PR #8854

Test report for easybuilders/easybuild-easyconfigs#8854

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS R-bundle-Bioconductor-3.9-foss-2019a-R-3.6.0.eb

Time info

  • start: Wed, 28 Aug 2019 15:26:23 +0000 (UTC)
@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8815_20192022-UTC-22-20-08.md
Created August 22, 2019 22:20
EasyBuild test report for easyconfigs PR #8815
@vanzod
vanzod / IPython-5.8.0-foss-2019a-Python-2.7.15_partial.log
Created August 22, 2019 22:20
(partial) EasyBuild log for failed build of /tmp/eb-AHyhVA/files_pr8815/i/IPython/IPython-5.8.0-foss-2019a-Python-2.7.15.eb (PR #8815)
os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3:/opt/easybuild/modules/all/Compiler/GCC/8.2.0-2.31.1:/opt/easybuild/modules/all/Compiler/GCCcore/8.2.0:/opt/easybuild/modules/all/Core:/tmp/eb-AHyhVA/tmpkcUsnV/all/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3:/opt/easybuild/modules/all";
os.environ["__LMOD_REF_COUNT_PATH"] = "/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:1\;/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/SciPy-bundle/2019.03/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/ZeroMQ/4.3.2/bin:1\;/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:1\;/opt/easybuild/software/Compiler/GCCc
@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8814_20191422-UTC-22-14-34.md
Created August 22, 2019 22:14
EasyBuild test report for easyconfigs PR #8814

Test report for easybuilders/easybuild-easyconfigs#8814

Test result

Build succeeded for 2 out of 2 (2 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS IPython-7.7.0-foss-2019a-Python-3.7.2.eb
  • SUCCESS IPython-7.7.0-intel-2019a-Python-3.7.2.eb

Time info

@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8760_20195422-UTC-21-54-35.md
Created August 22, 2019 21:54
EasyBuild test report for easyconfigs PR #8760

Test report for easybuilders/easybuild-easyconfigs#8760

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS R-bundle-Bioconductor-3.9-foss-2019a-R-3.6.0.eb

Time info

  • start: Thu, 22 Aug 2019 20:03:13 +0000 (UTC)
@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8812_20190422-UTC-14-04-26.md
Created August 22, 2019 14:04
EasyBuild test report for easyconfigs PR #8812

Test report for easybuilders/easybuild-easyconfigs#8812

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS umis-1.0.3-intel-2019a.eb

Time info

  • start: Thu, 22 Aug 2019 14:02:15 +0000 (UTC)
@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8808_20195822-UTC-13-58-20.md
Created August 22, 2019 13:58
EasyBuild test report for easyconfigs PR #8808

Test report for easybuilders/easybuild-easyconfigs#8808

Test result

Build succeeded for 2 out of 2 (2 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS Pysam-0.15.2-iccifort-2019.1.144-GCC-8.2.0-2.31.1.eb
  • SUCCESS pybedtools-0.8.0-intel-2019a.eb

Time info

@vanzod
vanzod / Rgraphviz-2.28.0_No_graphviz_vectorization.patch
Created August 17, 2019 00:45
diff -ru Rgraphviz.orig/configure Rgraphviz/configure
--- Rgraphviz.orig/configure 2019-08-16 16:43:31.410936497 -0500
+++ Rgraphviz/configure 2019-08-16 17:54:21.591054103 -0500
@@ -2151,7 +2151,7 @@
exit 1
fi
CC=`"${R_HOME}/bin/R" CMD config CC`
- CFLAGS=`"${R_HOME}/bin/R" CMD config CFLAGS`
+ CFLAGS="${CFLAGS} -fno-tree-vectorize"
CPPFLAGS=`"${R_HOME}/bin/R" CMD config CPPFLAGS`
@vanzod
vanzod / easybuild_test_report_easyconfigs_pr8782_20191715-UTC-22-17-33.md
Created August 15, 2019 22:17
EasyBuild test report for easyconfigs PR #8782

Test report for easybuilders/easybuild-easyconfigs#8782

Test result

Build succeeded for 2 out of 2 (2 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS GTS-0.7.6-GCCcore-8.2.0.eb
  • SUCCESS Graphviz-2.40.1-GCCcore-8.2.0.eb

Time info