Vamsi Kodali vkkodali
vkkodali
/ gff3_to_introns.py
Last active
November 2, 2018 00:47
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| #!/usr/bin/env python | |
| import csv | |
| import os | |
| import sys | |
| import gzip | |
| from collections import defaultdict | |
| import argparse | |
| # See http://stackoverflow.com/questions/14207708/ioerror-errno-32-broken-pipe-python |
vkkodali
/ disorder_to_tbl.py
Created
January 9, 2019 22:32
Script to parse MobiDB json file to generate a table
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| #! /usr/bin/env python3 | |
| import sys | |
| import gzip | |
| import json | |
| input_json = sys.argv[1] | |
| with gzip.open(input_json, 'rt') as f: | |
| for line in f: |