wasade

#!/usr/bin/env python
from __future__ import with_statement
import os
import re
import shutil
import subprocess
import sys
import tempfile

wasade

#include <gsl/gsl_rng.h>
#include <math.h>
#include "subsample.h"

/* subsample_col
 *
 * desc: subsample an array of COO objects, of length size, to a sum of (n)
 *
 * inputs: COO* list - an array of COO objects
 *         COO* ss_result - store the subsampled result

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# rename some files based on some counter

x=0  # set an environment variable for our counter
for i in foo/*  # for every file in the foo directory
do
    # we're going to rename the file, and prefix it with the value in the
    # counter. the variable $i will contain both the directory foo, as well as
    # the filename (e.g., foo/bar). Since we want to prefix the number on to
    # the filename, we need to somehow strip out the foo/ part. we can do this
    # using a program called basename (it's worth a peak at its man page).

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#!/bin/bash

OLD_VERSION=$1
NEW_VERSION=$2

cd trunk/examples
sed -ie "s/Biological Observation Matrix $OLD_VERSION/Biological Observation Matrix $NEW_VERSION/" *.biom

cd ../scripts
sed -ie "s/^__version__ = \"$OLD_VERSION\"/__version__ = \"$NEW_VERSION\"/" *.py