wckdouglas

#include <zlib.h>
#include <stdio.h>
#include <string.h>
#include "kseq.h"
#include "khash.h"

KSEQ_INIT(gzFile, gzread);
KHASH_SET_INIT_STR(s)
#define BUF_SIZE 2048

wckdouglas

#include <Rcpp.h>
using namespace Rcpp;


// [[Rcpp::export]]
NumericVector removeNA(NumericVector a)
{
	int vectorLength = a.size();
	NumericVector result(vectorLength);
	for (int i = 0; i < vectorLength ; i++)

wckdouglas

#include <Rcpp.h>
using namespace Rcpp;

// [[Rcpp::export]]
NumericVector bubbleSort(NumericVector a){
    //sorting a numeric vector in to a ascending list//
    int j, flag, vectorSize = a.size();
    double tempVal;
    NumericVector sortedVector(clone(a));
    NumericVector finalIndex(vectorSize);

wckdouglas

#include <Rcpp.h>
#include <stdlib.h>
using namespace Rcpp;
using namespace std;

// define pairs
typedef pair<double,int> pairType;


// define method for sorting

wckdouglas

#include <Rcpp.h>
#include <sstream>
#include <string>
#include <vector>

using namespace Rcpp;
using namespace std;

typedef vector<string> stringList;
typedef vector<int> numList;

wckdouglas

{% include comments.html %}

wckdouglas

<div id="disqus_thread"></div>
<script type="text/javascript">
    /* * * CONFIGURATION VARIABLES * * */
    var disqus_shortname = 'douglaswu';

    /* * * DON'T EDIT BELOW THIS LINE * * */
    (function() {
        var dsq = document.createElement('script'); dsq.type = 'text/javascript'; dsq.async = true;
        dsq.src = '//' + disqus_shortname + '.disqus.com/embed.js';
        (document.getElementsByTagName('head')[0] || document.getElementsByTagName('body')[0]).appendChild(dsq);

wckdouglas

#include <glob.h>
#include <iostream>
#include <fstream>
#include <gzstream.h>
#include <sstream>
#include <stdlib.h>
#include <string>
#include <vector>
#include <libgen.h>
#include <string.h>

wckdouglas

#include <Rcpp.h>

using namespace Rcpp;

double getProb(double p, int success, int fail){
	double e = success * log(p) + fail * log(1-p);
	return e;
}

wckdouglas

#include <iostream>
#include <sstream>
#include <fstream>
#include <string>
#include <vector>
#include <cassert>
#include <iomanip>
#include <cstring>
#include <map>