wstrinz

def to_literal(obj)
  if obj.is_a? String
    if val = Integer(obj) rescue nil
      val
    elsif val = Float(obj) rescue nil
      val
    else
      '"'+obj+'"'
    end
  elsif obj == nil

wstrinz

def code_lists(codes, data, var, options={})
  options = defaults().merge(options)
  lists = []
  codes.map{|code|
    str = <<-EOF.unindent
      code:#{code.downcase.capitalize} a rdfs:Class, owl:Class;
        rdfs:subClassOf skos:Concept ;
        rdfs:label "Code list for #{code} - codelist class"@en;
        rdfs:comment "Specifies the #{code} for each observation";
        rdfs:seeAlso code:#{code.downcase} .

wstrinz

def concept_codes(codes, data, var, options={})
  options = defaults().merge(options)
  concepts = []
  codes.map{|code|
    data[code].uniq.map{|value|
    concepts << <<-EOF.unindent
      <code/#{code.downcase}/#{value}> a skos:Concept, code:#{code.downcase.capitalize};
        skos:topConceptOf code:#{code.downcase} ;
        skos:prefLabel "#{value}" ;
        skos:inScheme code:#{code.downcase} .

wstrinz

@base <http://www.rqtl.org/ns/dc/> .
@prefix ns: <http://www.rqtl.org/ns/dataset/bacon#> .
@prefix qb: <http://purl.org/linked-data/cube#> .
@prefix rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prop: <http://www.rqtl.org/dc/properties/> .
@prefix cs: <http://www.rqtl.org/dc/dataset/bacon/cs/> .
@prefix code: <http://www.rqtl.org/dc/dataset/bacon/code/> .
@prefix class: <http://www.rqtl.org/dc/dataset/bacon/class/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

wstrinz

data_cube :triplified_example do
  source "examples/marker_regression.RData"
  dimensions "chr"
  measures "pos", "lod"
end

metadata do
  data :triplified_example
  description "Marker regression on example listeria dataset"
  author do

wstrinz

require 'nokogiri'
require 'open-uri'
require 'text-table'

def html_table(url,row_length,table_num = 0,ops=nil,header_length=row_length-1,less_headers=nil)
  doc = Nokogiri::HTML(open(url))
  main = doc.xpath('//table').to_a[table_num]
  vals = main.search('td//text()[normalize-space()]')
  headers = vals[0..header_length].map(&:to_s)
  rows = vals.to_a.reject{|v| headers.include? v.to_s}.each_slice(row_length)

wstrinz

require 'googlevoiceapi'
require 'json'


class GVPoller

  def fetch_messages
    api = @api
    json_data = api.messages_json()
    js = JSON.parse(json_data)

wstrinz

{
  "in_room": true,
  "settings": {
    "mgmtOptsOn": false,
    "contractsOn": false,
    "fields": 2
  },
  "stageName": "Plant",
  "year": 4,
  "stageNumber": 0,

wstrinz

require 'publisci'
include PubliSci::DSL

# Specify input data
data do
  # use local or remote paths
  source 'https://github.com/wstrinz/publisci/raw/master/spec/csv/bacon.csv'

  # specify datacube properties
  dimension 'producer', 'pricerange'

wstrinz

{
  "in_room": true,
  "settings":
  {
    "mgmtOptsOn": false,
    "contractsOn": false,
    "fields": 2
  },
  "stageName": "Plant",
  "year": 4,