agiliq

import random

class Markov(object):
	
	def __init__(self, open_file):
		self.cache = {}
		self.open_file = open_file
		self.words = self.file_to_words()
		self.word_size = len(self.words)
		self.database()

ayanamist

#!/usr/bin/python

__doc__ = """Tiny HTTP Proxy.

This module implements GET, HEAD, POST, PUT and DELETE methods
on BaseHTTPServer, and behaves as an HTTP proxy.  The CONNECT
method is also implemented experimentally, but has not been
tested yet.

Any help will be greatly appreciated.		SUZUKI Hisao

zachcp

#!/usr/bin/env python
"""Load a genbankfile into BioSQL

You will need to adjust the database parameters and have a BioSQL database set
up. See:

http://biopython.org/wiki/BioSQL

adapted from bchapmanns github script
https://github.com/chapmanb/bcbb > gff > Scripts > gff > gff_to_biosql.py

yosemitebandit

''' quick example showing how to attach a pdf to multipart messages
and then send them from SES via boto
'''

from email.mime.text import MIMEText
from email.mime.application import MIMEApplication
from email.mime.multipart import MIMEMultipart

import boto

tly1980

from fabric.api import env, local, sudo, cd
from fabric.contrib.files import append
from cuisine import user_ensure, group_ensure, group_user_ensure, file_local_read
from cuisine import select_package, package_update, package_ensure, dir_exists, run
from fabric.context_managers import prefix, settings


def vagrant():
    # change from the default user to 'vagrant'
    env.user = 'vagrant'

fcicq

SmartMachine 生存指南

by fcicq, CC-BY

SmartMachine 是 Joyent 家的虚拟化方案.
SmartOS 主要的卖点是 ZFS + DTrace + Zones (SmartMachine) + KVM (运行 Linux, Windows 等).
实际上 SmartOS 是 Joyent 以 Solaris 为基础 (因为 OpenSolaris 项目被中止而改名 illumos) 打包的操作系统.

SmartOS 作为 HOST 时, 虽然支持 KVM 虚拟化, 但不支持突发的 vCPU.
而 SmartMachine 是基于 Zones 的 (存储则是 ZFS), 比较类似 Linux 平台下 OpenVZ 或者 LXC 的方案.
资源用量由调度器决定, 只需要修改配额 (ZFS 也支持在线扩展) 就可以伸缩, 所以伸缩不需要重启.

alexcabrera

import bottle
from beaker.middleware import SessionMiddleware

session_opts = {
    'session.type': 'memory',
    'session.cookie_expires': 300,
    'session.auto': True
}
app = SessionMiddleware(bottle.app(), session_opts)

obenshaindw

#GATK Method <- Slower and keeps original ID plut dbSNP rsID
# R=Reference FASTA
# V=VCF file to add IDs to
# --dbsnp = dbsnp VCF -- download from NCBI FTP

java -jar GenomeAnalysisTK.jar -R /reference/Homo_sapiens_assembly19.fasta -T VariantAnnotator -V vcf_to_add_id_to.vcf --dbsnp /reference/dbsnp_137.b37.vcf.gz --out /data/Broad.chr1.annotated.vcf

#bcftools Method <- Faster, replaces existing ID with dbSNP rsID
/usr/bin/htslib/bcftools/bcftools annotate -a /reference/dbsnp_137.b37.vcf.gz -c ID vcf_to_add_id_to.vcf

porcupie

// https://tour.golang.org/methods/9
package main

import (
	"fmt"
	"math"
)

// new error type
type ErrorNegativeSqrt float64

byronhe

现代密码学实践指南[2015年]

标签（空格分隔）： 密码学

---

本文介绍目前现代密码学的最先进技术， 前半部分主要翻译自 《Cryptographic Right Answers》，附上收集的资料，和byron个人的理解。